Variant report

Variant	rs4244652
Chromosome Location	chr1:56404797-56404798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPAP2B-8	chr1:56404788-56404953	NONHSAT003428

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10493182	0.82[AMR][1000 genomes]
rs10493184	0.82[AMR][1000 genomes]
rs10789010	0.93[ASN][1000 genomes]
rs11206666	0.82[AMR][1000 genomes]
rs11579959	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12021672	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12022490	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12034422	0.82[AMR][1000 genomes]
rs12040991	0.82[AMR][1000 genomes]
rs12042939	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12045580	0.82[AMR][1000 genomes]
rs12403234	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12404504	0.82[AMR][1000 genomes]
rs12406573	0.82[AMR][1000 genomes]
rs12407474	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12409446	0.82[AMR][1000 genomes]
rs12563455	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112899	0.82[AMR][1000 genomes]
rs17112961	0.82[AMR][1000 genomes]
rs17113003	0.82[AMR][1000 genomes]
rs4244650	0.82[AMR][1000 genomes]
rs4244653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4271254	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4330956	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4353139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4367815	0.85[CHB][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4367816	0.86[AMR][1000 genomes]
rs4367817	0.91[GIH][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs4378251	0.93[ASN][1000 genomes]
rs4384274	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4394699	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4474303	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4478853	0.88[AFR][1000 genomes]
rs4559553	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4576690	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4593870	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4625325	0.93[ASN][1000 genomes]
rs4633318	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4926702	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4927273	0.82[AMR][1000 genomes]
rs4927278	1.00[ASN][1000 genomes]
rs4927283	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4927284	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61774842	0.93[ASN][1000 genomes]
rs6588580	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6588589	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6684334	0.84[ASN][1000 genomes]
rs6684428	0.93[ASN][1000 genomes]
rs6687146	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3326463	chr1:56404789-56407792	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56402000-56416800	Weak transcription	Aorta	Aorta
2	chr1:56403200-56406200	Enhancers	Fetal Muscle Leg	muscle
3	chr1:56403400-56404800	Enhancers	Stomach Smooth Muscle	stomach
4	chr1:56403400-56405000	Enhancers	Fetal Muscle Trunk	muscle
5	chr1:56403400-56405000	Enhancers	Ovary	ovary
6	chr1:56403600-56404800	Enhancers	Left Ventricle	heart
7	chr1:56403600-56404800	Enhancers	Right Ventricle	heart
8	chr1:56403800-56404800	Enhancers	Colon Smooth Muscle	Colon
9	chr1:56403800-56404800	Enhancers	Fetal Stomach	stomach
10	chr1:56403800-56404800	Enhancers	Right Atrium	heart
11	chr1:56404000-56405200	Enhancers	Fetal Heart	heart
12	chr1:56404600-56408600	Weak transcription	Fetal Lung	lung
13	chr1:56404600-56416200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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