Variant report

Variant	rs4559553
Chromosome Location	chr1:56385562-56385563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56385562..56386307-chr1:56396787..56397745,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10493182	0.88[AMR][1000 genomes]
rs10493184	0.88[AMR][1000 genomes]
rs10789010	0.93[ASN][1000 genomes]
rs11206666	0.88[AMR][1000 genomes]
rs11579959	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11800033	1.00[EUR][1000 genomes]
rs11802771	1.00[EUR][1000 genomes]
rs11811576	1.00[EUR][1000 genomes]
rs12021672	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12022490	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12028981	0.85[AMR][1000 genomes]
rs12033494	0.85[AMR][1000 genomes]
rs12034422	0.88[AMR][1000 genomes]
rs12040991	0.88[AMR][1000 genomes]
rs12042939	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12045580	0.88[AMR][1000 genomes]
rs12403234	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12404504	0.88[AMR][1000 genomes]
rs12406573	0.88[AMR][1000 genomes]
rs12407474	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12409446	0.88[AMR][1000 genomes]
rs12563455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112899	0.88[AMR][1000 genomes]
rs17112961	0.88[AMR][1000 genomes]
rs17113003	0.88[AMR][1000 genomes]
rs4244650	0.88[AMR][1000 genomes]
rs4244652	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4244653	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4271254	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4330956	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4353139	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4367815	1.00[ASN][1000 genomes]
rs4367816	0.81[AMR][1000 genomes]
rs4367817	0.81[AMR][1000 genomes]
rs4378251	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4384274	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4394699	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4474303	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4576690	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4593870	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4625325	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4633318	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4926702	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4927273	0.88[AMR][1000 genomes]
rs4927278	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927283	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4927284	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58459838	1.00[EUR][1000 genomes]
rs60853722	1.00[EUR][1000 genomes]
rs61774842	0.93[ASN][1000 genomes]
rs6588580	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6588589	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6684334	0.84[ASN][1000 genomes]
rs6684428	0.93[ASN][1000 genomes]
rs6687146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56381600-56386400	Weak transcription	Placenta	Placenta
2	chr1:56382600-56386400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:56382600-56393400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56382800-56392800	Weak transcription	Fetal Lung	lung
5	chr1:56383000-56393400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:56383200-56386200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:56384000-56386200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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