Variant report

Variant	rs7517995
Chromosome Location	chr1:56347686-56347687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10493183	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10493185	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10493187	1.00[ASN][1000 genomes]
rs10493189	1.00[ASN][1000 genomes]
rs10493190	1.00[ASN][1000 genomes]
rs10493191	1.00[ASN][1000 genomes]
rs10789010	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10888940	1.00[ASN][1000 genomes]
rs10888942	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888944	0.82[EUR][1000 genomes]
rs10888947	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888948	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206673	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206677	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206680	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206681	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206689	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206690	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11582662	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12058087	1.00[ASN][1000 genomes]
rs12070494	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092701	1.00[ASN][1000 genomes]
rs12118218	1.00[ASN][1000 genomes]
rs12119904	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12120132	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12123418	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123610	1.00[ASN][1000 genomes]
rs12124871	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138137	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12141873	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145137	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112888	1.00[ASN][1000 genomes]
rs17113073	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067637	1.00[ASN][1000 genomes]
rs41285922	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4130692	0.99[EUR][1000 genomes]
rs4313435	0.82[EUR][1000 genomes]
rs55693755	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58538058	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59959484	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774839	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774842	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61774843	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777585	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61777621	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6659096	1.00[ASN][1000 genomes]
rs6684334	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6684428	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6691673	1.00[ASN][1000 genomes]
rs6693526	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7516605	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517205	1.00[ASN][1000 genomes]
rs7530878	1.00[ASN][1000 genomes]
rs7540772	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56343800-56350400	Weak transcription	NHDF-Ad	bronchial
2	chr1:56344200-56348400	Weak transcription	Fetal Lung	lung
3	chr1:56344800-56348400	Weak transcription	Ovary	ovary
4	chr1:56346000-56354600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:56347000-56352000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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