Variant report

Variant	rs11206690
Chromosome Location	chr1:56407227-56407228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10493183	1.00[ASN][1000 genomes]
rs10493185	1.00[ASN][1000 genomes]
rs10493187	1.00[ASN][1000 genomes]
rs10493189	1.00[ASN][1000 genomes]
rs10493190	1.00[ASN][1000 genomes]
rs10493191	1.00[ASN][1000 genomes]
rs10888940	1.00[ASN][1000 genomes]
rs10888942	1.00[ASN][1000 genomes]
rs10888947	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10888948	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206673	1.00[ASN][1000 genomes]
rs11206677	1.00[ASN][1000 genomes]
rs11206680	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206681	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206689	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11582662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058087	1.00[ASN][1000 genomes]
rs12070494	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12092701	1.00[ASN][1000 genomes]
rs12118218	1.00[ASN][1000 genomes]
rs12119904	1.00[ASN][1000 genomes]
rs12120132	1.00[ASN][1000 genomes]
rs12123418	1.00[ASN][1000 genomes]
rs12123610	1.00[ASN][1000 genomes]
rs12124871	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12138137	1.00[ASN][1000 genomes]
rs12141873	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12145137	1.00[ASN][1000 genomes]
rs17112888	1.00[ASN][1000 genomes]
rs17113073	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2067637	1.00[ASN][1000 genomes]
rs41285922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693755	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58538058	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59959484	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774839	1.00[ASN][1000 genomes]
rs61774843	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61777585	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777621	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659096	1.00[ASN][1000 genomes]
rs6662998	1.00[CHD][hapmap]
rs6691673	1.00[ASN][1000 genomes]
rs6693526	0.82[AMR][1000 genomes]
rs7516605	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7517205	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517995	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7530878	1.00[ASN][1000 genomes]
rs7540772	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3326463	chr1:56404789-56407792	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11206690	ZYG11A	cis	cerebellum	SCAN
rs11206690	YIPF1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56402000-56416800	Weak transcription	Aorta	Aorta
2	chr1:56404600-56408600	Weak transcription	Fetal Lung	lung
3	chr1:56404600-56416200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56404800-56409000	Weak transcription	Colon Smooth Muscle	Colon

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