The 2.0 version of rSNPBase

Variant report

Variant rs10493190
Chromosome Location chr1:56299527-56299528
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:25 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56295200-56320400 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr1:56297400-56301400 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:56298000-56300800 Enhancers Fetal Lung lung
4 chr1:56298000-56302000 Enhancers Fetal Stomach stomach
5 chr1:56298400-56300000 Enhancers Fetal Brain Male brain
6 chr1:56298600-56299800 Enhancers Fetal Brain Female brain
7 chr1:56298600-56299800 Enhancers NHLF lung
8 chr1:56298600-56300000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:56298600-56300000 Enhancers Fetal Muscle Leg muscle
10 chr1:56298600-56300400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:56298600-56300800 Enhancers Colon Smooth Muscle Colon
12 chr1:56298800-56299600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr1:56298800-56300000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr1:56298800-56300200 Enhancers Osteobl bone
15 chr1:56298800-56302000 Weak transcription Aorta Aorta
16 chr1:56299000-56299600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
17 chr1:56299000-56300000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr1:56299000-56300200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr1:56299000-56300200 Enhancers Muscle Satellite Cultured Cells --
20 chr1:56299000-56300400 Enhancers Rectal Smooth Muscle rectum
21 chr1:56299200-56299600 Weak transcription Ovary ovary
22 chr1:56299200-56299800 Flanking Active TSS NHDF-Ad bronchial
23 chr1:56299200-56300000 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:56299200-56300000 Enhancers Stomach Smooth Muscle stomach
25 chr1:56299400-56300000 Enhancers Fetal Kidney kidney

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Last update: Aug 31, 2015