Variant report

Variant	rs7516605
Chromosome Location	chr1:56343290-56343291
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10493183	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10493185	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10493187	1.00[ASN][1000 genomes]
rs10493189	1.00[ASN][1000 genomes]
rs10493190	1.00[ASN][1000 genomes]
rs10493191	1.00[ASN][1000 genomes]
rs10789010	0.98[EUR][1000 genomes]
rs10888940	1.00[ASN][1000 genomes]
rs10888942	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888944	0.82[EUR][1000 genomes]
rs10888947	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888948	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206673	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206677	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206680	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206681	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206689	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206690	1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11582662	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12058087	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12070494	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092701	1.00[ASN][1000 genomes]
rs12118218	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12119904	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12120132	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12123418	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123610	1.00[ASN][1000 genomes]
rs12124871	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138137	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12141873	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145137	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112888	1.00[ASN][1000 genomes]
rs17113073	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067637	1.00[ASN][1000 genomes]
rs41285922	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4130692	0.99[EUR][1000 genomes]
rs4313435	0.82[EUR][1000 genomes]
rs55693755	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58538058	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59959484	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774839	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774842	0.89[EUR][1000 genomes]
rs61774843	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777585	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61777621	1.00[ASN][1000 genomes]
rs6659096	1.00[ASN][1000 genomes]
rs6662998	1.00[CHD][hapmap]
rs6684334	0.94[EUR][1000 genomes]
rs6684428	0.94[EUR][1000 genomes]
rs6691673	1.00[ASN][1000 genomes]
rs6693526	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7517205	1.00[ASN][1000 genomes]
rs7517995	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530878	1.00[ASN][1000 genomes]
rs7540772	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56341600-56344200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56342000-56343600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:56342000-56343800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr1:56342200-56345200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56342600-56344200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr1:56342600-56344400	Weak transcription	Ovary	ovary
7	chr1:56342600-56344800	Enhancers	Fetal Intestine Small	intestine
8	chr1:56342800-56343600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:56342800-56343600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:56342800-56343600	Weak transcription	NHDF-Ad	bronchial
11	chr1:56343000-56344600	Enhancers	Fetal Intestine Large	intestine
12	chr1:56343200-56343600	Enhancers	Hela-S3	cervix
13	chr1:56343200-56343800	Enhancers	Psoas Muscle	Psoas
14	chr1:56343200-56344200	Enhancers	Fetal Lung	lung

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