Variant report

Variant	rs6693526
Chromosome Location	chr1:56349764-56349765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10789010	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10888942	0.82[EUR][1000 genomes]
rs10888944	0.80[EUR][1000 genomes]
rs10888945	0.80[AMR][1000 genomes]
rs10888947	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10888948	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11206677	0.82[EUR][1000 genomes]
rs11206680	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11206681	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11206689	0.82[AMR][1000 genomes]
rs11206690	0.82[AMR][1000 genomes]
rs11582662	0.82[AMR][1000 genomes]
rs12070494	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123418	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12124871	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12141873	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12145137	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17113073	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41285922	0.82[AMR][1000 genomes]
rs4130692	0.97[EUR][1000 genomes]
rs4313435	0.80[EUR][1000 genomes]
rs55693755	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58538058	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59959484	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61774839	0.82[EUR][1000 genomes]
rs61774842	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61774843	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61777585	0.92[AMR][1000 genomes]
rs6684334	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6684428	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7516605	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7517995	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7540772	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56343800-56350400	Weak transcription	NHDF-Ad	bronchial
2	chr1:56346000-56354600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:56347000-56352000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56348600-56350800	Weak transcription	Fetal Stomach	stomach
5	chr1:56349000-56352400	Weak transcription	Fetal Lung	lung

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