Variant report

Variant	rs12123418
Chromosome Location	chr1:56383394-56383395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10493183	1.00[ASN][1000 genomes]
rs10493185	1.00[ASN][1000 genomes]
rs10493187	1.00[ASN][1000 genomes]
rs10493189	1.00[ASN][1000 genomes]
rs10493190	1.00[ASN][1000 genomes]
rs10493191	1.00[ASN][1000 genomes]
rs10789010	0.85[EUR][1000 genomes]
rs10888940	1.00[ASN][1000 genomes]
rs10888942	1.00[ASN][1000 genomes]
rs10888947	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888948	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206673	1.00[ASN][1000 genomes]
rs11206677	1.00[ASN][1000 genomes]
rs11206680	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206681	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206689	1.00[ASN][1000 genomes]
rs11206690	0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs11582662	1.00[ASN][1000 genomes]
rs12058087	1.00[ASN][1000 genomes]
rs12070494	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092701	1.00[ASN][1000 genomes]
rs12118218	1.00[ASN][1000 genomes]
rs12119904	1.00[ASN][1000 genomes]
rs12120132	1.00[ASN][1000 genomes]
rs12123610	1.00[ASN][1000 genomes]
rs12124871	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138137	1.00[ASN][1000 genomes]
rs12141873	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145137	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112888	1.00[ASN][1000 genomes]
rs17113073	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067637	1.00[ASN][1000 genomes]
rs41285922	1.00[ASN][1000 genomes]
rs4130692	0.82[EUR][1000 genomes]
rs55693755	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58538058	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59959484	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774839	1.00[ASN][1000 genomes]
rs61774842	0.93[EUR][1000 genomes]
rs61774843	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777585	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777621	1.00[ASN][1000 genomes]
rs6659096	1.00[ASN][1000 genomes]
rs6684334	0.89[EUR][1000 genomes]
rs6684428	0.89[EUR][1000 genomes]
rs6691673	1.00[ASN][1000 genomes]
rs6693526	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7516605	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517205	1.00[ASN][1000 genomes]
rs7517995	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530878	1.00[ASN][1000 genomes]
rs7540772	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56381600-56383400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56381600-56386400	Weak transcription	Placenta	Placenta
3	chr1:56382600-56386400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:56382600-56393400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56382800-56392800	Weak transcription	Fetal Lung	lung
6	chr1:56383000-56393400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:56383200-56386200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links