Variant report

Variant	rs4928537
Chromosome Location	chr6:58779779-58779780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:58777993..58779849-chr8:94211437..94213575,2	MCF-7	breast:
2	chr20:45984506..45987023-chr6:58776231..58780015,3	MCF-7	breast:
3	chr2:220113661..220115481-chr6:58779094..58780648,2	MCF-7	breast:
4	chr17:57914586..57918340-chr6:58776843..58780440,4	MCF-7	breast:
5	chr6:57252756..57255373-chr6:58778906..58780647,2	MCF-7	breast:
6	chr11:62597650..62599373-chr6:58779077..58780591,2	MCF-7	breast:
7	chr1:9910788..9913768-chr6:58778329..58780695,2	MCF-7	breast:
8	chr17:57930610..57932922-chr6:58777438..58780644,3	MCF-7	breast:
9	chr1:121484489..121485231-chr6:58779321..58780005,2	MCF-7	breast:
10	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:
11	chr14:69258719..69262658-chr6:58778237..58780699,3	MCF-7	breast:
12	chr6:27776232..27779951-chr6:58776955..58780402,3	MCF-7	breast:
13	chr20:60960325..60962671-chr6:58777619..58780127,2	MCF-7	breast:
14	chr6:58777751..58780199-chr8:128748477..128750306,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000203813	Chromatin interaction
ENSG00000212017	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000171858	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000185650	Chromatin interaction
ENSG00000136997	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6588726	0.98[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603237	chr6:58231219-58780055	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
2	nsv427758	chr6:58502261-58780166	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	esv3401131	chr6:58771993-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
4	esv3348712	chr6:58772493-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
5	esv3351952	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
6	esv3370259	chr6:58772493-58780166	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
7	esv3402710	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
8	nsv821263	chr6:58773370-58780132	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
9	esv16605	chr6:58773521-58780132	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
10	nsv603246	chr6:58775200-58780055	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
11	nsv603248	chr6:58776605-58780055	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
12	esv14420	chr6:58776769-58780132	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Weak transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
13	esv3407359	chr6:58776886-58779843	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
14	nsv603249	chr6:58776961-58780055	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	57 gene(s)	inside rSNPs	diseases
15	esv3522069	chr6:58778569-58779874	ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	43 gene(s)	inside rSNPs	diseases
16	esv3522070	chr6:58778569-58779874	Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	43 gene(s)	inside rSNPs	diseases
17	esv2631522	chr6:58779463-58779802	ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58779400-58779800	Weak transcription	Right Ventricle	heart
2	chr6:58779400-58780000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:58779400-58780000	Active TSS	HSMMtube	muscle
4	chr6:58779400-58780000	ZNF genes & repeats	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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