Variant report

Variant	rs4934397
Chromosome Location	chr10:90134990-90134991
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4934396	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4934402	0.87[EUR][1000 genomes]
rs72820008	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72820013	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72820014	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72820015	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72820018	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72820020	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72820026	0.82[EUR][1000 genomes]
rs72820032	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90132800-90137800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:90133600-90135600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:90134200-90135000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr10:90134200-90135200	Enhancers	Primary T cells from cord blood	blood
5	chr10:90134200-90135600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:90134200-90135800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:90134200-90135800	Enhancers	Dnd41	blood
8	chr10:90134400-90135800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:90134600-90135000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:90134600-90135200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:90134600-90135400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr10:90134600-90139600	Weak transcription	Fetal Intestine Large	intestine
13	chr10:90134800-90135000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:90134800-90135200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:90134800-90135600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:90134800-90135600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:90134800-90139200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:90134800-90139400	Weak transcription	Small Intestine	intestine
19	chr10:90134800-90139400	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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