Variant report

Variant	rs493567
Chromosome Location	chr11:59571054-59571055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59521037..59522134-chr11:59569735..59571070,7	MCF-7	breast:
2	chr11:59568062..59571452-chr11:59575621..59577818,3	MCF-7	breast:
3	chr11:59567507..59571426-chr11:59571607..59574837,4	MCF-7	breast:
4	chr11:59559044..59563434-chr11:59567753..59571194,4	K562	blood:
5	chr11:59520892..59524346-chr11:59566262..59571236,10	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AP000790.1-4	chr11:59570202-59573350	NONHSAT021545

No data

Variant related genes	Relation type
ENSG00000166902	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000254477	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1144728	1.00[YRI][hapmap]
rs2509731	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs477945	1.00[AFR][1000 genomes]
rs478935	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs491671	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs504954	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs515974	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs538323	1.00[AFR][1000 genomes]
rs539537	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs547093	1.00[AFR][1000 genomes]
rs554598	0.86[AFR][1000 genomes]
rs569031	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59524600-59573800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:59534600-59571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:59541000-59573600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:59542200-59571400	Weak transcription	Thymus	Thymus
5	chr11:59544400-59573200	Weak transcription	Psoas Muscle	Psoas
6	chr11:59551400-59572800	Weak transcription	Dnd41	blood
7	chr11:59551600-59573600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:59551600-59576600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:59551600-59577200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:59552000-59573000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:59554800-59576400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:59554800-59576400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr11:59555000-59573800	Weak transcription	Small Intestine	intestine
14	chr11:59555000-59576800	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:59555600-59576600	Strong transcription	Placenta	Placenta
16	chr11:59555800-59573600	Weak transcription	HSMM	muscle
17	chr11:59556000-59577000	Weak transcription	Fetal Heart	heart
18	chr11:59558800-59571800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:59559800-59571400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:59561000-59573600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:59561000-59573800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:59561200-59571600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:59561600-59573000	Weak transcription	Brain Germinal Matrix	brain
24	chr11:59561800-59573000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:59562400-59571400	Weak transcription	NH-A	brain
26	chr11:59562600-59571800	Weak transcription	Fetal Thymus	thymus
27	chr11:59563400-59571600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:59563400-59573800	Weak transcription	HSMMtube	muscle
29	chr11:59563600-59573000	Weak transcription	Esophagus	oesophagus
30	chr11:59563600-59573600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:59563800-59571200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:59563800-59571600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:59563800-59573000	Weak transcription	HepG2	liver
34	chr11:59563800-59573800	Weak transcription	Gastric	stomach
35	chr11:59564000-59571200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:59564000-59571400	Weak transcription	NHLF	lung
37	chr11:59564200-59573000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:59564400-59571200	Weak transcription	Fetal Brain Female	brain
39	chr11:59564400-59571400	Weak transcription	Fetal Stomach	stomach
40	chr11:59565200-59573000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:59565400-59571400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:59565400-59573200	Weak transcription	Right Ventricle	heart
43	chr11:59565400-59573600	Weak transcription	Pancreas	Pancrea
44	chr11:59565600-59573200	Weak transcription	NHDF-Ad	bronchial
45	chr11:59566000-59571200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:59566600-59573800	Weak transcription	Ovary	ovary
47	chr11:59567000-59576400	Strong transcription	Primary B cells from cord blood	blood
48	chr11:59567200-59576600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:59567800-59574800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:59568200-59571600	Weak transcription	Hela-S3	cervix

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