Variant report

Variant	rs504954
Chromosome Location	chr11:59565349-59565350
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59562792..59565690-chr11:59576632..59578850,2	K562	blood:
2	chr1:38384503..38385314-chr11:59564892..59565733,2	MCF-7	breast:
3	chr11:59557765..59559673-chr11:59564880..59566549,2	K562	blood:
4	chr11:59524086..59527100-chr11:59562036..59566257,3	K562	blood:
5	chr11:59519179..59526050-chr11:59565310..59570378,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166902	Chromatin interaction
ENSG00000254477	Chromatin interaction
ENSG00000166900	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1144728	1.00[YRI][hapmap]
rs2509731	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs477945	1.00[AFR][1000 genomes]
rs478935	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs491671	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs493567	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs515974	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs538323	1.00[AFR][1000 genomes]
rs539537	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs547093	1.00[AFR][1000 genomes]
rs554598	0.86[AFR][1000 genomes]
rs569031	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59524600-59573800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:59534600-59571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:59537600-59570400	Weak transcription	Fetal Kidney	kidney
4	chr11:59541000-59573600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:59542200-59571400	Weak transcription	Thymus	Thymus
6	chr11:59544400-59573200	Weak transcription	Psoas Muscle	Psoas
7	chr11:59546400-59568800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:59551400-59572800	Weak transcription	Dnd41	blood
9	chr11:59551600-59573600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:59551600-59576600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:59551600-59577200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:59552000-59573000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:59554200-59565600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:59554200-59565600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:59554400-59565600	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr11:59554400-59569000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:59554600-59565800	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:59554600-59569000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:59554800-59565800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:59554800-59568800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:59554800-59576400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:59554800-59576400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:59555000-59566600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:59555000-59567800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:59555000-59573800	Weak transcription	Small Intestine	intestine
26	chr11:59555000-59576800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:59555200-59565800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:59555200-59566000	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:59555400-59565800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr11:59555400-59566000	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:59555600-59565400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr11:59555600-59565800	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr11:59555600-59567000	Strong transcription	Fetal Intestine Small	intestine
34	chr11:59555600-59567200	Strong transcription	Fetal Intestine Large	intestine
35	chr11:59555600-59569600	Weak transcription	Right Atrium	heart
36	chr11:59555600-59576600	Strong transcription	Placenta	Placenta
37	chr11:59555800-59569000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:59555800-59569200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:59555800-59573600	Weak transcription	HSMM	muscle
40	chr11:59556000-59565800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:59556000-59566400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:59556000-59577000	Weak transcription	Fetal Heart	heart
43	chr11:59556200-59565400	Strong transcription	Left Ventricle	heart
44	chr11:59556200-59565600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:59556400-59565400	Strong transcription	Pancreas	Pancrea
46	chr11:59556400-59569000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:59556400-59569400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:59557000-59565400	Strong transcription	Right Ventricle	heart
49	chr11:59557200-59565800	Strong transcription	HMEC	breast
50	chr11:59557400-59565400	Strong transcription	Skeletal Muscle Male	skeletal muscle

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