Variant report

Variant	rs4936632
Chromosome Location	chr11:121335728-121335729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121325023..121328765-chr11:121335029..121337208,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12798073	0.86[JPT][hapmap]
rs1784934	1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs618874	0.93[ASN][1000 genomes]
rs624310	0.86[JPT][hapmap]
rs640515	0.92[ASN][1000 genomes]
rs641120	0.86[JPT][hapmap]
rs643010	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs645275	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs687228	0.86[JPT][hapmap]
rs689021	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4936632	CD3G	cis	cerebellum	SCAN
rs4936632	TMEM25	cis	cerebellum	SCAN
rs4936632	PAFAH1B2	cis	parietal	SCAN
rs4936632	HEPACAM	cis	cerebellum	SCAN
rs4936632	MLL	cis	cerebellum	SCAN

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121323800-121336800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:121323800-121336800	Weak transcription	Gastric	stomach
3	chr11:121325000-121336800	Weak transcription	Colonic Mucosa	Colon
4	chr11:121325400-121338000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr11:121330000-121336800	Enhancers	Brain Hippocampus Middle	brain
6	chr11:121330600-121336600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr11:121330800-121337000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr11:121330800-121337000	Weak transcription	Fetal Lung	lung
9	chr11:121331600-121336000	Flanking Active TSS	GM12878-XiMat	blood
10	chr11:121331600-121336200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:121331600-121336600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:121331600-121341200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:121331800-121339000	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:121332000-121338800	Enhancers	Brain Angular Gyrus	brain
15	chr11:121332000-121339800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:121332800-121337000	Weak transcription	Adipose Nuclei	Adipose
17	chr11:121332800-121339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:121333000-121337000	Enhancers	Primary T cells from cord blood	blood
19	chr11:121333000-121340600	Enhancers	Fetal Thymus	thymus
20	chr11:121333200-121337200	Weak transcription	Fetal Kidney	kidney
21	chr11:121333200-121343400	Enhancers	Liver	Liver
22	chr11:121333400-121340800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:121333600-121337200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:121333600-121338200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:121333600-121339000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr11:121333600-121340000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr11:121333800-121337200	Enhancers	Stomach Smooth Muscle	stomach
28	chr11:121333800-121337200	Enhancers	HMEC	breast
29	chr11:121333800-121339800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr11:121333800-121340000	Enhancers	Brain Substantia Nigra	brain
31	chr11:121334000-121337000	Enhancers	Stomach Mucosa	stomach
32	chr11:121334000-121337200	Enhancers	Brain Anterior Caudate	brain
33	chr11:121334000-121337200	Enhancers	Rectal Smooth Muscle	rectum
34	chr11:121334000-121340000	Enhancers	Brain Cingulate Gyrus	brain
35	chr11:121334200-121336800	Enhancers	Fetal Intestine Small	intestine
36	chr11:121334200-121339800	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr11:121334200-121340000	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr11:121334200-121340800	Enhancers	Primary hematopoietic stem cells	blood
39	chr11:121334400-121336600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:121334400-121336800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr11:121334400-121337000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr11:121334400-121337200	Enhancers	NH-A	brain
43	chr11:121334400-121337600	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr11:121334400-121338600	Enhancers	Primary B cells from cord blood	blood
45	chr11:121334400-121338800	Enhancers	Fetal Intestine Large	intestine
46	chr11:121334400-121339000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr11:121334400-121339200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:121334600-121336200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:121334600-121336600	Enhancers	Duodenum Mucosa	Duodenum
50	chr11:121334600-121336600	Enhancers	A549	lung

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