Variant report

Variant	rs643010
Chromosome Location	chr11:121336471-121336472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121335936..121338346-chr11:121344006..121346639,3	MCF-7	breast:
2	chr11:121325023..121328765-chr11:121335029..121337208,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1784934	0.93[ASN][1000 genomes]
rs4936632	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs618874	0.95[ASN][1000 genomes]
rs640515	0.91[ASN][1000 genomes]
rs645275	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121323800-121336800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:121323800-121336800	Weak transcription	Gastric	stomach
3	chr11:121325000-121336800	Weak transcription	Colonic Mucosa	Colon
4	chr11:121325400-121338000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr11:121330000-121336800	Enhancers	Brain Hippocampus Middle	brain
6	chr11:121330600-121336600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr11:121330800-121337000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr11:121330800-121337000	Weak transcription	Fetal Lung	lung
9	chr11:121331600-121336600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:121331600-121341200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:121331800-121339000	Enhancers	Primary B cells from peripheral blood	blood
12	chr11:121332000-121338800	Enhancers	Brain Angular Gyrus	brain
13	chr11:121332000-121339800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:121332800-121337000	Weak transcription	Adipose Nuclei	Adipose
15	chr11:121332800-121339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:121333000-121337000	Enhancers	Primary T cells from cord blood	blood
17	chr11:121333000-121340600	Enhancers	Fetal Thymus	thymus
18	chr11:121333200-121337200	Weak transcription	Fetal Kidney	kidney
19	chr11:121333200-121343400	Enhancers	Liver	Liver
20	chr11:121333400-121340800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:121333600-121337200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:121333600-121338200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr11:121333600-121339000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr11:121333600-121340000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:121333800-121337200	Enhancers	Stomach Smooth Muscle	stomach
26	chr11:121333800-121337200	Enhancers	HMEC	breast
27	chr11:121333800-121339800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr11:121333800-121340000	Enhancers	Brain Substantia Nigra	brain
29	chr11:121334000-121337000	Enhancers	Stomach Mucosa	stomach
30	chr11:121334000-121337200	Enhancers	Brain Anterior Caudate	brain
31	chr11:121334000-121337200	Enhancers	Rectal Smooth Muscle	rectum
32	chr11:121334000-121340000	Enhancers	Brain Cingulate Gyrus	brain
33	chr11:121334200-121336800	Enhancers	Fetal Intestine Small	intestine
34	chr11:121334200-121339800	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr11:121334200-121340000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr11:121334200-121340800	Enhancers	Primary hematopoietic stem cells	blood
37	chr11:121334400-121336600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:121334400-121336800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr11:121334400-121337000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr11:121334400-121337200	Enhancers	NH-A	brain
41	chr11:121334400-121337600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr11:121334400-121338600	Enhancers	Primary B cells from cord blood	blood
43	chr11:121334400-121338800	Enhancers	Fetal Intestine Large	intestine
44	chr11:121334400-121339000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr11:121334400-121339200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:121334600-121336600	Enhancers	Duodenum Mucosa	Duodenum
47	chr11:121334600-121336600	Enhancers	A549	lung
48	chr11:121334600-121336800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:121334600-121338600	Enhancers	Colon Smooth Muscle	Colon
50	chr11:121334600-121338600	Enhancers	HUVEC	blood vessel

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