Variant report

Variant	rs618874
Chromosome Location	chr11:121343561-121343562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121314908..121316644-chr11:121341905..121344129,2	MCF-7	breast:
2	chr11:121342384..121344746-chr11:121348986..121351578,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1784934	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4936632	0.93[ASN][1000 genomes]
rs593769	0.81[EUR][1000 genomes]
rs624310	0.81[EUR][1000 genomes]
rs640515	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs643010	0.95[ASN][1000 genomes]
rs645275	0.95[ASN][1000 genomes]
rs662821	0.82[EUR][1000 genomes]
rs681970	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121337400-121347000	Weak transcription	Gastric	stomach
2	chr11:121337400-121349400	Weak transcription	Ovary	ovary
3	chr11:121337400-121350600	Weak transcription	Left Ventricle	heart
4	chr11:121337400-121358800	Weak transcription	Right Ventricle	heart
5	chr11:121337600-121358800	Weak transcription	Brain Germinal Matrix	brain
6	chr11:121338200-121348800	Weak transcription	Colonic Mucosa	Colon
7	chr11:121338200-121349000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:121338600-121343800	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:121339000-121343800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:121339000-121349200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:121339000-121358200	Weak transcription	Aorta	Aorta
12	chr11:121339200-121343600	Weak transcription	NHEK	skin
13	chr11:121339200-121343800	Weak transcription	HMEC	breast
14	chr11:121339200-121344000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:121339200-121345600	Genic enhancers	GM12878-XiMat	blood
16	chr11:121339200-121346200	Weak transcription	Stomach Mucosa	stomach
17	chr11:121339200-121346800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:121339200-121347200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:121339200-121348200	Weak transcription	Pancreas	Pancrea
20	chr11:121339200-121348800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:121339200-121349000	Weak transcription	Lung	lung
22	chr11:121339200-121349000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:121339400-121345000	Strong transcription	HepG2	liver
24	chr11:121339400-121345600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
25	chr11:121339800-121343800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:121339800-121347200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:121339800-121351000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr11:121339800-121351000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:121340000-121348200	Weak transcription	Esophagus	oesophagus
30	chr11:121340000-121349000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:121340200-121344000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr11:121340400-121349400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:121340600-121344200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr11:121340600-121344400	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:121340600-121348400	Genic enhancers	Primary T cells fromperipheralblood	blood
36	chr11:121340800-121349000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
37	chr11:121340800-121351400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:121341000-121346600	Strong transcription	Fetal Thymus	thymus
39	chr11:121341000-121348200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:121341000-121349600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:121341200-121343800	Weak transcription	Fetal Brain Female	brain
42	chr11:121341200-121345400	Strong transcription	Primary T cells from cord blood	blood
43	chr11:121341200-121349000	Strong transcription	Primary hematopoietic stem cells	blood
44	chr11:121341800-121344200	Enhancers	Brain Angular Gyrus	brain
45	chr11:121342000-121343800	Enhancers	Fetal Brain Male	brain
46	chr11:121342000-121345600	Enhancers	Brain Substantia Nigra	brain
47	chr11:121342000-121346200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr11:121342200-121344200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:121342200-121345000	Enhancers	Brain Cingulate Gyrus	brain
50	chr11:121342200-121346200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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