Variant report

Variant	rs4945025
Chromosome Location	chr11:75424191-75424192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75422622..75424217-chr11:75428907..75431196,2	MCF-7	breast:
2	chr11:75423646..75425640-chr11:75430589..75432654,2	K562	blood:
3	chr11:75422436..75425229-chr11:75478373..75480962,2	K562	blood:

Variant related genes	Relation type
ENSG00000062282	Chromatin interaction
ENSG00000247867	Chromatin interaction
ENSG00000166391	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12787057	0.81[CEU][hapmap];0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs12788163	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12791815	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12792816	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12793003	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368135	0.92[CHD][hapmap];0.83[ASN][1000 genomes]
rs17310982	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2508388	0.86[EUR][1000 genomes]
rs2510632	0.84[EUR][1000 genomes]
rs473013	0.88[JPT][hapmap]
rs473791	0.86[JPT][hapmap]
rs4944085	0.82[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4945024	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57398723	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61329757	0.89[ASN][1000 genomes]
rs61544743	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61897970	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7120248	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7127841	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7127973	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	esv3368208	chr11:75423782-75424232	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75423800-75425000	Enhancers	Colonic Mucosa	Colon
2	chr11:75423800-75425000	Enhancers	Duodenum Mucosa	Duodenum
3	chr11:75423800-75425200	Enhancers	K562	blood
4	chr11:75424000-75424800	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr11:75424000-75425000	Enhancers	Fetal Intestine Small	intestine
6	chr11:75424000-75425400	Enhancers	Fetal Intestine Large	intestine
7	chr11:75424000-75428200	Enhancers	Rectal Mucosa Donor 31	rectum

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