Variant report

Variant	rs12792816
Chromosome Location	chr11:75426340-75426341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12787057	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12788163	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12791815	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12793003	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1368135	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945025	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61329757	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897968	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61897970	0.81[ASN][1000 genomes]
rs7127841	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7127973	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7938066	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75424000-75428200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr11:75424800-75427200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:75425000-75426600	Weak transcription	Fetal Intestine Small	intestine
4	chr11:75425000-75427000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:75425000-75427200	Weak transcription	Colonic Mucosa	Colon
6	chr11:75425400-75426600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:75425600-75427200	Weak transcription	HepG2	liver
8	chr11:75426200-75426800	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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