Variant report

Variant	rs61329757
Chromosome Location	chr11:75432654-75432655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75423646..75425640-chr11:75430589..75432654,2	K562	blood:
2	chr11:75427256..75429895-chr11:75431498..75434297,2	K562	blood:

Variant related genes	Relation type
ENSG00000166391	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12787057	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12788163	0.86[ASN][1000 genomes]
rs12791815	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12792816	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793003	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1368135	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945025	0.89[ASN][1000 genomes]
rs61897968	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61897970	0.81[ASN][1000 genomes]
rs7127841	0.86[ASN][1000 genomes]
rs7127973	0.82[ASN][1000 genomes]
rs7938066	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75429600-75432800	Weak transcription	Spleen	Spleen
2	chr11:75429600-75439600	Weak transcription	Fetal Stomach	stomach
3	chr11:75429800-75436800	Weak transcription	Right Atrium	heart
4	chr11:75430200-75436800	Weak transcription	Right Ventricle	heart
5	chr11:75430400-75433600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:75430400-75434800	Weak transcription	Fetal Heart	heart
7	chr11:75430600-75432800	Weak transcription	Fetal Thymus	thymus
8	chr11:75430600-75433800	Weak transcription	GM12878-XiMat	blood
9	chr11:75431000-75433200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:75431000-75439800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:75431200-75432800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:75431200-75432800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:75431200-75433600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:75431200-75434000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
15	chr11:75431200-75436800	Weak transcription	Left Ventricle	heart
16	chr11:75431200-75437000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:75431400-75432800	Enhancers	Colonic Mucosa	Colon
18	chr11:75432200-75432800	Active TSS	Duodenum Mucosa	Duodenum
19	chr11:75432200-75433600	Flanking Active TSS	Fetal Intestine Large	intestine
20	chr11:75432400-75433400	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:75432600-75432800	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr11:75432600-75433600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:75432600-75433600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr11:75432600-75433800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:75432600-75433800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:75432600-75434000	Enhancers	Adipose Nuclei	Adipose
27	chr11:75432600-75434000	Flanking Active TSS	Liver	Liver
28	chr11:75432600-75434000	Flanking Active TSS	HepG2	liver
29	chr11:75432600-75435200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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