Variant report

Variant	rs4945078
Chromosome Location	chr11:76102129-76102130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76089990..76094695-chr11:76100568..76104844,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137492	Chromatin interaction
ENSG00000179240	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11236742	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944107	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4945080	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7928709	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7937236	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76093000-76111000	Weak transcription	Aorta	Aorta
2	chr11:76093600-76110000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:76093800-76102200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:76094200-76102200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:76094200-76102400	Weak transcription	Hela-S3	cervix
6	chr11:76094200-76104800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:76094400-76102200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:76094400-76103000	Weak transcription	Small Intestine	intestine
9	chr11:76094400-76103600	Weak transcription	Fetal Brain Female	brain
10	chr11:76094400-76104400	Weak transcription	Gastric	stomach
11	chr11:76094600-76102200	Weak transcription	Spleen	Spleen
12	chr11:76094600-76104600	Weak transcription	Lung	lung
13	chr11:76095200-76103400	Weak transcription	Primary B cells from cord blood	blood
14	chr11:76096200-76102200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:76096200-76103200	Weak transcription	Fetal Lung	lung
16	chr11:76097200-76122000	Weak transcription	Fetal Stomach	stomach
17	chr11:76097800-76102400	Weak transcription	Fetal Intestine Small	intestine
18	chr11:76097800-76103400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:76098000-76102200	Weak transcription	HepG2	liver
20	chr11:76100400-76109000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:76101400-76103400	Enhancers	Stomach Mucosa	stomach
22	chr11:76101400-76104800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:76101800-76104800	Enhancers	Primary hematopoietic stem cells	blood
24	chr11:76102000-76102400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:76102000-76102400	Enhancers	Brain Germinal Matrix	brain
26	chr11:76102000-76102400	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr11:76102000-76102600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:76102000-76102600	Enhancers	Colon Smooth Muscle	Colon
29	chr11:76102000-76102600	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr11:76102000-76102600	Enhancers	Fetal Muscle Leg	muscle
31	chr11:76102000-76102600	Active TSS	Stomach Smooth Muscle	stomach
32	chr11:76102000-76103200	Enhancers	Pancreas	Pancrea
33	chr11:76102000-76103200	Enhancers	Psoas Muscle	Psoas
34	chr11:76102000-76103200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr11:76102000-76103600	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr11:76102000-76104600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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