Variant report

Variant	rs11236742
Chromosome Location	chr11:76108796-76108797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4944107	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4944108	0.86[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs4945078	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945080	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945083	0.86[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs6592633	0.84[EUR][1000 genomes]
rs7115322	0.84[EUR][1000 genomes]
rs7129437	0.84[EUR][1000 genomes]
rs7928709	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7937236	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs868124	0.86[JPT][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv17044	chr11:76107247-76111858	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11236742	ARRB1	cis	cerebellum	SCAN
rs11236742	UCP2	cis	parietal	SCAN
rs11236742	STARD10	cis	cerebellum	SCAN
rs11236742	C2CD3	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76093000-76111000	Weak transcription	Aorta	Aorta
2	chr11:76093600-76110000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:76097200-76122000	Weak transcription	Fetal Stomach	stomach
4	chr11:76100400-76109000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:76104600-76110200	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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