Variant report

Variant	rs7937236
Chromosome Location	chr11:76103137-76103138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:76103109-76103620	HepG2	liver:	n/a	n/a
2	FOXA1	chr11:76103128-76103542	HepG2	liver:	n/a	n/a
3	FOXA1	chr11:76103112-76103545	HepG2	liver:	n/a	n/a
4	FOXA1	chr11:76103056-76103492	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76089990..76094695-chr11:76100568..76104844,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271757	TF binding region
ENSG00000179240	Chromatin interaction
ENSG00000137492	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11236742	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4944107	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945078	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945080	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7928709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76093000-76111000	Weak transcription	Aorta	Aorta
2	chr11:76093600-76110000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:76094200-76104800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:76094400-76103600	Weak transcription	Fetal Brain Female	brain
5	chr11:76094400-76104400	Weak transcription	Gastric	stomach
6	chr11:76094600-76104600	Weak transcription	Lung	lung
7	chr11:76095200-76103400	Weak transcription	Primary B cells from cord blood	blood
8	chr11:76096200-76103200	Weak transcription	Fetal Lung	lung
9	chr11:76097200-76122000	Weak transcription	Fetal Stomach	stomach
10	chr11:76097800-76103400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:76100400-76109000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:76101400-76103400	Enhancers	Stomach Mucosa	stomach
13	chr11:76101400-76104800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:76101800-76104800	Enhancers	Primary hematopoietic stem cells	blood
15	chr11:76102000-76103200	Enhancers	Pancreas	Pancrea
16	chr11:76102000-76103200	Enhancers	Psoas Muscle	Psoas
17	chr11:76102000-76103200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr11:76102000-76103600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:76102000-76104600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:76102600-76103800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:76102600-76104000	Enhancers	Duodenum Mucosa	Duodenum
22	chr11:76102600-76104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:76103000-76103400	Enhancers	Fetal Intestine Small	intestine
24	chr11:76103000-76103600	Enhancers	Small Intestine	intestine
25	chr11:76103000-76103600	Flanking Active TSS	HepG2	liver

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