Variant report

Variant	rs4946573
Chromosome Location	chr6:121809617-121809618
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12201001	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359234	0.91[ASN][1000 genomes]
rs1408277	0.98[ASN][1000 genomes]
rs1408278	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2389547	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569210	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569211	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6901013	0.89[ASN][1000 genomes]
rs6921266	0.85[ASN][1000 genomes]
rs7742729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748671	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398635	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490300	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807000-121812600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:121807400-121812600	Weak transcription	Hela-S3	cervix
3	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:121808200-121810000	Enhancers	A549	lung
5	chr6:121808400-121810000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:121808400-121810000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:121808400-121810400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:121808400-121810400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:121808600-121809800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:121808600-121809800	Enhancers	HMEC	breast
11	chr6:121808600-121810400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:121808800-121809800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:121809000-121810400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:121809200-121810000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:121809400-121809800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:121809400-121809800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:121809400-121810000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:121809400-121810600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:121809600-121809800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:121809600-121810000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:121809600-121810000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:121809600-121810000	Enhancers	NHEK	skin

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