Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12201001	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1359234	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408277	0.93[ASN][1000 genomes]
rs1408278	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570630	0.89[ASN][1000 genomes]
rs2389547	0.88[ASN][1000 genomes]
rs4143301	0.89[ASN][1000 genomes]
rs4357173	0.89[ASN][1000 genomes]
rs4946571	0.85[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs4946573	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6569210	0.91[ASN][1000 genomes]
rs6569211	0.86[ASN][1000 genomes]
rs6569212	0.89[ASN][1000 genomes]
rs6901013	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6921266	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7742729	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7748671	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7762594	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9387965	0.89[ASN][1000 genomes]
rs9398635	0.91[ASN][1000 genomes]
rs9401411	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9490300	HSF2	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:121811800-121813400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:121811800-121814000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:121812600-121813400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr6:121812600-121813400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:121812600-121813400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:121812800-121816200	Weak transcription	A549	lung
8	chr6:121813000-121813600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:121813000-121814200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:121813000-121824200	Weak transcription	Hela-S3	cervix
11	chr6:121813200-121814000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:121813200-121814600	Weak transcription	Aorta	Aorta
13	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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