Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12201001	0.85[ASN][1000 genomes]
rs1359234	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408277	0.87[ASN][1000 genomes]
rs1408278	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1570630	0.87[ASN][1000 genomes]
rs2389547	0.82[ASN][1000 genomes]
rs4143301	0.87[ASN][1000 genomes]
rs4357173	0.87[ASN][1000 genomes]
rs4946571	0.85[ASN][1000 genomes]
rs4946573	0.85[ASN][1000 genomes]
rs6569210	0.85[ASN][1000 genomes]
rs6569211	0.81[ASN][1000 genomes]
rs6569212	0.87[ASN][1000 genomes]
rs6901013	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7742729	0.85[ASN][1000 genomes]
rs7748671	0.85[ASN][1000 genomes]
rs7762594	0.85[ASN][1000 genomes]
rs9387965	0.87[ASN][1000 genomes]
rs9398635	0.85[ASN][1000 genomes]
rs9401411	0.87[ASN][1000 genomes]
rs9490300	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:121813000-121824200	Weak transcription	Hela-S3	cervix
3	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:121816800-121820000	Weak transcription	A549	lung
5	chr6:121817200-121825400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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