Variant report
| Variant | rs4948636 |
|---|---|
| Chromosome Location | chr10:45005002-45005003 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10900042 | 0.86[ASN][1000 genomes] |
| rs10900043 | 0.86[ASN][1000 genomes] |
| rs10900048 | 0.98[ASN][1000 genomes] |
| rs10900055 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11239053 | 0.86[ASN][1000 genomes] |
| rs11239061 | 0.86[ASN][1000 genomes] |
| rs11239062 | 0.86[ASN][1000 genomes] |
| rs11239063 | 0.87[ASN][1000 genomes] |
| rs1147941 | 0.85[ASN][1000 genomes] |
| rs1147949 | 0.86[ASN][1000 genomes] |
| rs1147950 | 0.86[ASN][1000 genomes] |
| rs11598951 | 0.86[ASN][1000 genomes] |
| rs1253716 | 0.86[ASN][1000 genomes] |
| rs1419281 | 0.85[ASN][1000 genomes] |
| rs1572204 | 0.86[ASN][1000 genomes] |
| rs3897796 | 0.98[ASN][1000 genomes] |
| rs4948637 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4948893 | 0.87[ASN][1000 genomes] |
| rs4948901 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6593415 | 0.86[ASN][1000 genomes] |
| rs6593416 | 0.86[ASN][1000 genomes] |
| rs6593417 | 0.86[ASN][1000 genomes] |
| rs6593418 | 0.86[ASN][1000 genomes] |
| rs6593419 | 0.86[ASN][1000 genomes] |
| rs6593420 | 0.86[ASN][1000 genomes] |
| rs7067631 | 0.86[ASN][1000 genomes] |
| rs7071025 | 0.84[ASN][1000 genomes] |
| rs7087908 | 0.86[ASN][1000 genomes] |
| rs7899455 | 0.87[ASN][1000 genomes] |
| rs7905396 | 0.86[ASN][1000 genomes] |
| rs7909036 | 0.86[ASN][1000 genomes] |
| rs7909184 | 0.86[ASN][1000 genomes] |
| rs7911230 | 0.81[ASN][1000 genomes] |
| rs7920634 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895101 | chr10:44909081-45007131 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4948636 | FXYD4 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:45003800-45008800 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
