Variant report

Variant	rs3897796
Chromosome Location	chr10:44988367-44988368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:35)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:35 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:44988079-44988393	HepG2	liver:	n/a	n/a
2	HNF4A	chr10:44988119-44988410	HepG2	liver:	n/a	chr10:44988316-44988331
3	SIN3AK20	chr10:44987835-44988557	MCF-7	breast:	n/a	n/a
4	ELF1	chr10:44988193-44988438	HepG2	liver:	n/a	n/a
5	RXRA	chr10:44988192-44988495	HepG2	liver:	n/a	n/a
6	ESR1	chr10:44988064-44988531	T-47D	breast:	n/a	n/a
7	RXRA	chr10:44988117-44988551	HepG2	liver:	n/a	n/a
8	FOXA2	chr10:44988138-44988434	HepG2	liver:	n/a	n/a
9	GATA3	chr10:44987995-44988643	MCF-7	breast:	n/a	n/a
10	ZNF217	chr10:44988079-44988508	MCF-7	breast:	n/a	n/a
11	NR2F2	chr10:44988040-44988668	MCF-7	breast:	n/a	n/a
12	TEAD4	chr10:44988120-44988421	MCF-7	breast:	n/a	n/a
13	HNF4A	chr10:44988175-44988428	HepG2	liver:	n/a	chr10:44988316-44988331
14	FOXA1	chr10:44988116-44988390	T-47D	breast:	n/a	n/a
15	NR2F2	chr10:44987945-44988508	MCF-7	breast:	n/a	n/a
16	FOXA1	chr10:44988044-44988445	HepG2	liver:	n/a	n/a
17	EP300	chr10:44988157-44988518	HepG2	liver:	n/a	n/a
18	GATA3	chr10:44988082-44988506	MCF-7	breast:	n/a	n/a
19	FOXA1	chr10:44988125-44988390	T-47D	breast:	n/a	n/a
20	ELF1	chr10:44988191-44988421	HepG2	liver:	n/a	n/a
21	ESR1	chr10:44988066-44988504	T-47D	breast:	n/a	n/a
22	EP300	chr10:44987978-44988634	MCF-7	breast:	n/a	n/a
23	TCF7L2	chr10:44988125-44988536	MCF-7	breast:	n/a	n/a
24	GATA3	chr10:44988113-44988441	MCF-7	breast:	n/a	n/a
25	GATA3	chr10:44988132-44988438	T-47D	breast:	n/a	n/a
26	SP1	chr10:44988106-44988504	HepG2	liver:	n/a	n/a
27	FOXA1	chr10:44988153-44988611	HepG2	liver:	n/a	n/a
28	FOXA1	chr10:44987971-44988489	HepG2	liver:	n/a	n/a
29	SIN3AK20	chr10:44987935-44988658	MCF-7	breast:	n/a	n/a
30	GATA3	chr10:44988054-44988498	T-47D	breast:	n/a	n/a
31	GATA3	chr10:44987912-44988646	MCF-7	breast:	n/a	n/a
32	HDAC2	chr10:44988081-44988510	MCF-7	breast:	n/a	n/a
33	EP300	chr10:44988140-44988674	MCF-7	breast:	n/a	n/a
34	TCF12	chr10:44987935-44988731	MCF-7	breast:	n/a	n/a
35	ELF1	chr10:44988008-44988540	MCF-7	breast:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44987770..44989687-chr10:44990275..44991904,2	K562	blood:
2	chr10:44988057..44990131-chr10:44990134..44991941,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270767	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10900042	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10900043	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10900048	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239043	0.84[EUR][1000 genomes]
rs11239053	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11239061	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11239062	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11239063	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1147941	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1147949	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1147950	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11598951	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1253716	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1419281	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1572204	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2225819	0.82[EUR][1000 genomes]
rs4948636	0.98[ASN][1000 genomes]
rs4948637	0.98[ASN][1000 genomes]
rs4948893	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948901	0.98[ASN][1000 genomes]
rs6593415	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6593416	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6593417	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6593418	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6593419	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6593420	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7067631	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7070870	0.85[EUR][1000 genomes]
rs7071025	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7087908	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7899455	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7905396	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7909036	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7909184	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7911230	0.81[ASN][1000 genomes]
rs7920634	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv947901	chr10:44974108-45000726	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44987800-44988800	Enhancers	HepG2	liver

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