Variant report

Variant	rs1419281
Chromosome Location	chr10:44956550-44956551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44956453..44959425-chr10:44971550..44974365,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10793540	0.89[ASN][1000 genomes]
rs10900036	0.92[ASN][1000 genomes]
rs10900037	0.92[ASN][1000 genomes]
rs10900042	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900043	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900048	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11239036	0.89[ASN][1000 genomes]
rs11239043	0.92[ASN][1000 genomes]
rs11239053	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11239061	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11239062	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11239063	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1147941	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147949	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147950	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11523862	0.92[ASN][1000 genomes]
rs11598951	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253716	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12763241	0.89[ASN][1000 genomes]
rs12764958	0.89[ASN][1000 genomes]
rs12770922	0.89[ASN][1000 genomes]
rs1572204	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1599985	0.89[ASN][1000 genomes]
rs2225819	0.92[ASN][1000 genomes]
rs35213189	0.89[ASN][1000 genomes]
rs3897796	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3961908	0.89[ASN][1000 genomes]
rs3980045	0.89[ASN][1000 genomes]
rs4948636	0.85[ASN][1000 genomes]
rs4948637	0.85[ASN][1000 genomes]
rs4948881	0.87[ASN][1000 genomes]
rs4948889	0.92[ASN][1000 genomes]
rs4948893	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948901	0.85[ASN][1000 genomes]
rs6593415	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593416	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593417	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593418	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593419	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593420	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7067631	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7070870	0.92[ASN][1000 genomes]
rs7071025	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7074207	0.92[ASN][1000 genomes]
rs7075418	0.92[ASN][1000 genomes]
rs7086409	0.92[ASN][1000 genomes]
rs7087908	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899455	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905396	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7909036	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7909184	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7911230	0.89[ASN][1000 genomes]
rs7916506	0.91[ASN][1000 genomes]
rs7917412	0.92[ASN][1000 genomes]
rs7920634	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44954000-44958800	Weak transcription	Brain Hippocampus Middle	brain
2	chr10:44954200-44957200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44954600-44959200	Weak transcription	NHDF-Ad	bronchial
4	chr10:44954800-44957600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44955000-44957800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:44955400-44961000	Weak transcription	Fetal Stomach	stomach
7	chr10:44955800-44960800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:44955800-44968400	Weak transcription	Psoas Muscle	Psoas
9	chr10:44955800-44971800	Weak transcription	Right Atrium	heart
10	chr10:44956400-44956600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:44956400-44956600	Enhancers	Spleen	Spleen
12	chr10:44956400-44958000	Weak transcription	Fetal Lung	lung
13	chr10:44956400-44959800	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links