Variant report

Variant	rs4948881
Chromosome Location	chr10:44896035-44896036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10793540	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10900036	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10900037	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10900042	0.87[ASN][1000 genomes]
rs10900043	0.87[ASN][1000 genomes]
rs11239036	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11239038	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11239039	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11239043	0.94[ASN][1000 genomes]
rs11239053	0.87[ASN][1000 genomes]
rs11239061	0.87[ASN][1000 genomes]
rs11239062	0.87[ASN][1000 genomes]
rs11239063	0.87[ASN][1000 genomes]
rs1147941	0.87[ASN][1000 genomes]
rs1147949	0.87[ASN][1000 genomes]
rs1147950	0.87[ASN][1000 genomes]
rs11523862	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598951	0.87[ASN][1000 genomes]
rs1253716	0.87[ASN][1000 genomes]
rs12763241	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12764958	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12770922	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419281	0.87[ASN][1000 genomes]
rs1572204	0.87[ASN][1000 genomes]
rs1599985	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2225819	0.94[ASN][1000 genomes]
rs35213189	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3961908	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3980045	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948889	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948893	0.87[ASN][1000 genomes]
rs6593415	0.87[ASN][1000 genomes]
rs6593416	0.87[ASN][1000 genomes]
rs6593417	0.87[ASN][1000 genomes]
rs6593418	0.87[ASN][1000 genomes]
rs6593419	0.87[ASN][1000 genomes]
rs6593420	0.87[ASN][1000 genomes]
rs7067631	0.87[ASN][1000 genomes]
rs7070870	0.94[ASN][1000 genomes]
rs7071025	0.86[ASN][1000 genomes]
rs7074207	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7075418	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7086409	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7087908	0.87[ASN][1000 genomes]
rs7899455	0.87[ASN][1000 genomes]
rs7905396	0.87[ASN][1000 genomes]
rs7909036	0.87[ASN][1000 genomes]
rs7909184	0.87[ASN][1000 genomes]
rs7911230	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7916506	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7917412	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7920634	0.87[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44892000-44898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:44892400-44896600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44893600-44896400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:44895000-44896200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:44895000-44896400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:44895800-44896200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr10:44895800-44896400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:44895800-44896800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:44895800-44896800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr10:44895800-44898000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:44896000-44896200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:44896000-44896400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:44896000-44898000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:44896000-44898000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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