Variant report

Variant	rs11239039
Chromosome Location	chr10:44915818-44915819
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10793540	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10900036	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10900037	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10900042	0.80[ASN][1000 genomes]
rs10900043	0.80[ASN][1000 genomes]
rs11239036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11239038	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239043	0.86[ASN][1000 genomes]
rs11239053	0.80[ASN][1000 genomes]
rs11239061	0.80[ASN][1000 genomes]
rs11239062	0.80[ASN][1000 genomes]
rs1147949	0.80[ASN][1000 genomes]
rs1147950	0.80[ASN][1000 genomes]
rs11523862	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11598951	0.80[ASN][1000 genomes]
rs1253716	0.80[ASN][1000 genomes]
rs12763241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12764958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12770922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1572204	0.80[ASN][1000 genomes]
rs1599985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2225819	0.86[ASN][1000 genomes]
rs35213189	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3961908	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3980045	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4948881	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948889	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6593415	0.80[ASN][1000 genomes]
rs6593416	0.80[ASN][1000 genomes]
rs6593417	0.80[ASN][1000 genomes]
rs6593418	0.80[ASN][1000 genomes]
rs6593419	0.80[ASN][1000 genomes]
rs6593420	0.80[ASN][1000 genomes]
rs7067631	0.80[ASN][1000 genomes]
rs7070870	0.86[ASN][1000 genomes]
rs7074207	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7075418	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7086409	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7087908	0.80[ASN][1000 genomes]
rs7905396	0.80[ASN][1000 genomes]
rs7909036	0.80[ASN][1000 genomes]
rs7909184	0.80[ASN][1000 genomes]
rs7911230	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7916506	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7917412	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7920634	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44907000-44918400	Weak transcription	Right Atrium	heart
2	chr10:44912200-44919800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44913000-44918400	Weak transcription	Fetal Lung	lung
4	chr10:44914600-44916000	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44915400-44916200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:44915600-44916000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:44915800-44916200	Enhancers	Primary T cells from cord blood	blood
8	chr10:44915800-44916200	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:44915800-44917200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:44915800-44919600	Weak transcription	Pancreas	Pancrea

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