Variant report

Variant	rs11239043
Chromosome Location	chr10:44931721-44931722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44931249..44933954-chr10:44941041..44943076,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10793540	0.96[ASN][1000 genomes]
rs10900036	1.00[ASN][1000 genomes]
rs10900037	1.00[ASN][1000 genomes]
rs10900042	0.93[ASN][1000 genomes]
rs10900043	0.93[ASN][1000 genomes]
rs11239036	0.96[ASN][1000 genomes]
rs11239038	0.86[ASN][1000 genomes]
rs11239039	0.86[ASN][1000 genomes]
rs11239053	0.93[ASN][1000 genomes]
rs11239061	0.93[ASN][1000 genomes]
rs11239062	0.93[ASN][1000 genomes]
rs11239063	0.92[ASN][1000 genomes]
rs1147934	0.84[AFR][1000 genomes]
rs1147938	0.80[AFR][1000 genomes]
rs1147941	0.92[ASN][1000 genomes]
rs1147949	0.93[ASN][1000 genomes]
rs1147950	0.93[ASN][1000 genomes]
rs11523862	1.00[ASN][1000 genomes]
rs11598951	0.93[ASN][1000 genomes]
rs1253716	0.93[ASN][1000 genomes]
rs12763241	0.96[ASN][1000 genomes]
rs12764958	0.96[ASN][1000 genomes]
rs12770922	0.96[ASN][1000 genomes]
rs1419281	0.92[ASN][1000 genomes]
rs1572204	0.93[ASN][1000 genomes]
rs1599985	0.96[ASN][1000 genomes]
rs1779360	0.84[AFR][1000 genomes]
rs2225819	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35213189	0.96[ASN][1000 genomes]
rs3897796	0.84[EUR][1000 genomes]
rs3961908	0.96[ASN][1000 genomes]
rs3980045	0.96[ASN][1000 genomes]
rs4948881	0.94[ASN][1000 genomes]
rs4948889	1.00[ASN][1000 genomes]
rs4948893	0.92[ASN][1000 genomes]
rs6593415	0.93[ASN][1000 genomes]
rs6593416	0.93[ASN][1000 genomes]
rs6593417	0.93[ASN][1000 genomes]
rs6593418	0.93[ASN][1000 genomes]
rs6593419	0.93[ASN][1000 genomes]
rs6593420	0.93[ASN][1000 genomes]
rs7067631	0.93[ASN][1000 genomes]
rs7070870	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071025	0.92[ASN][1000 genomes]
rs7074207	1.00[ASN][1000 genomes]
rs7075418	1.00[ASN][1000 genomes]
rs7086409	1.00[ASN][1000 genomes]
rs7087908	0.93[ASN][1000 genomes]
rs7899455	0.92[ASN][1000 genomes]
rs7905396	0.93[ASN][1000 genomes]
rs7909036	0.93[ASN][1000 genomes]
rs7909184	0.93[ASN][1000 genomes]
rs7911230	0.96[ASN][1000 genomes]
rs7916506	0.98[ASN][1000 genomes]
rs7917412	1.00[ASN][1000 genomes]
rs7920634	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11239043	TMEM72	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44931600-44932400	Enhancers	Placenta	Placenta
2	chr10:44931600-44932800	Enhancers	Adipose Nuclei	Adipose

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