Variant report

Variant	rs1779360
Chromosome Location	chr10:44932831-44932832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44931249..44933954-chr10:44941041..44943076,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10900041	0.93[EUR][1000 genomes]
rs10900044	0.90[EUR][1000 genomes]
rs10900045	0.92[EUR][1000 genomes]
rs11239043	0.84[AFR][1000 genomes]
rs11239065	0.93[EUR][1000 genomes]
rs1147920	0.97[EUR][1000 genomes]
rs1147922	0.94[EUR][1000 genomes]
rs1147925	0.97[EUR][1000 genomes]
rs1147927	0.97[EUR][1000 genomes]
rs1147933	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1147934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147937	0.99[EUR][1000 genomes]
rs1147938	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147939	0.99[EUR][1000 genomes]
rs1147944	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1147956	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1147958	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147960	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1147963	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1147965	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1253711	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1253712	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1253725	0.99[EUR][1000 genomes]
rs1253727	0.99[EUR][1000 genomes]
rs1253737	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253738	0.97[EUR][1000 genomes]
rs1253740	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1253741	0.95[EUR][1000 genomes]
rs1253744	0.97[EUR][1000 genomes]
rs1253746	0.97[EUR][1000 genomes]
rs1253748	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253944	0.89[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs1270503	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334315	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1413517	0.93[EUR][1000 genomes]
rs1413518	0.92[EUR][1000 genomes]
rs1573237	0.92[EUR][1000 genomes]
rs1631775	0.91[EUR][1000 genomes]
rs1779361	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2785120	0.97[EUR][1000 genomes]
rs2785121	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948628	0.94[EUR][1000 genomes]
rs4948629	0.93[EUR][1000 genomes]
rs883366	0.92[EUR][1000 genomes]
rs883367	0.92[EUR][1000 genomes]
rs915084	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44932200-44935800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:44932400-44933200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:44932400-44933400	Weak transcription	Placenta	Placenta
4	chr10:44932800-44934000	Weak transcription	Adipose Nuclei	Adipose

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