Variant report

Variant	rs883367
Chromosome Location	chr10:44974617-44974618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10900041	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10900044	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900045	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239049	0.85[ASN][1000 genomes]
rs11239065	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1147920	0.93[EUR][1000 genomes]
rs1147922	0.91[EUR][1000 genomes]
rs1147925	0.93[EUR][1000 genomes]
rs1147927	0.92[EUR][1000 genomes]
rs1147933	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1147934	0.92[EUR][1000 genomes]
rs1147937	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1147938	0.92[EUR][1000 genomes]
rs1147939	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1147944	0.86[EUR][1000 genomes]
rs1147956	0.87[EUR][1000 genomes]
rs1147958	0.99[EUR][1000 genomes]
rs1147960	0.98[EUR][1000 genomes]
rs1147963	0.99[EUR][1000 genomes]
rs1147965	0.99[EUR][1000 genomes]
rs1253711	0.99[EUR][1000 genomes]
rs1253712	0.99[EUR][1000 genomes]
rs1253725	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1253727	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1253737	0.92[EUR][1000 genomes]
rs1253738	0.92[EUR][1000 genomes]
rs1253740	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1253741	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1253744	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1253746	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1253748	0.93[EUR][1000 genomes]
rs1253944	0.86[EUR][1000 genomes]
rs1270503	0.93[EUR][1000 genomes]
rs1334315	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1413517	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1413518	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573237	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1631775	0.88[EUR][1000 genomes]
rs1779360	0.92[EUR][1000 genomes]
rs1779361	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2785120	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2785121	0.94[EUR][1000 genomes]
rs4948628	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948629	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs883366	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915084	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv947901	chr10:44974108-45000726	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44971600-44975200	Enhancers	Fetal Muscle Leg	muscle
2	chr10:44971600-44975400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:44971600-44975400	Enhancers	Osteobl	bone
4	chr10:44971800-44975400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:44972000-44976000	Enhancers	Ovary	ovary
6	chr10:44972200-44975200	Enhancers	K562	blood
7	chr10:44972800-44974800	Weak transcription	Fetal Stomach	stomach
8	chr10:44972800-44975800	Weak transcription	Right Ventricle	heart
9	chr10:44973200-44976200	Enhancers	Adipose Nuclei	Adipose
10	chr10:44973600-44976000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:44973800-44975200	Enhancers	Colon Smooth Muscle	Colon
12	chr10:44973800-44975400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:44974000-44975200	Enhancers	Psoas Muscle	Psoas
14	chr10:44974400-44975000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:44974400-44975600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:44974600-44975400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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