Variant report

Variant	rs1147958
Chromosome Location	chr10:44970427-44970428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10900041	0.98[EUR][1000 genomes]
rs10900044	0.96[EUR][1000 genomes]
rs10900045	0.99[EUR][1000 genomes]
rs11239065	0.98[EUR][1000 genomes]
rs1147920	0.92[EUR][1000 genomes]
rs1147922	0.90[EUR][1000 genomes]
rs1147925	0.92[EUR][1000 genomes]
rs1147927	0.91[EUR][1000 genomes]
rs1147933	0.92[EUR][1000 genomes]
rs1147934	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147937	0.92[EUR][1000 genomes]
rs1147938	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1147939	0.92[EUR][1000 genomes]
rs1147944	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1147956	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147960	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1147963	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1147965	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1253711	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1253712	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1253725	0.92[EUR][1000 genomes]
rs1253727	0.92[EUR][1000 genomes]
rs1253737	0.92[EUR][1000 genomes]
rs1253738	0.91[EUR][1000 genomes]
rs1253740	0.98[EUR][1000 genomes]
rs1253741	0.94[EUR][1000 genomes]
rs1253744	0.94[EUR][1000 genomes]
rs1253746	0.94[EUR][1000 genomes]
rs1253748	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1253944	0.89[CEU][hapmap];0.87[JPT][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs1270503	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1334315	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1413517	0.98[EUR][1000 genomes]
rs1413518	0.97[EUR][1000 genomes]
rs1573237	0.99[EUR][1000 genomes]
rs1631775	0.86[EUR][1000 genomes]
rs1779360	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1779361	0.92[EUR][1000 genomes]
rs2785120	0.94[EUR][1000 genomes]
rs2785121	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948628	0.97[EUR][1000 genomes]
rs4948629	0.98[EUR][1000 genomes]
rs883366	0.98[EUR][1000 genomes]
rs883367	0.99[EUR][1000 genomes]
rs915084	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2756014	chr10:44966294-44972694	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44955800-44971800	Weak transcription	Right Atrium	heart
2	chr10:44966600-44971800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:44967200-44971400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:44967200-44971800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:44967400-44972000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:44968800-44971600	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:44968800-44971600	Weak transcription	Osteobl	bone
8	chr10:44968800-44974000	Weak transcription	Psoas Muscle	Psoas
9	chr10:44969000-44971800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:44969000-44972000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:44970400-44970600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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