Variant report

Variant	rs11239065
Chromosome Location	chr10:44971884-44971885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44956453..44959425-chr10:44971550..44974365,2	K562	blood:
2	chr10:44965493..44968784-chr10:44970633..44973291,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10900041	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10900044	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10900045	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239049	0.88[ASN][1000 genomes]
rs1147920	0.94[EUR][1000 genomes]
rs1147922	0.92[EUR][1000 genomes]
rs1147925	0.94[EUR][1000 genomes]
rs1147927	0.93[EUR][1000 genomes]
rs1147933	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1147934	0.93[EUR][1000 genomes]
rs1147937	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1147938	0.93[EUR][1000 genomes]
rs1147939	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1147944	0.85[EUR][1000 genomes]
rs1147956	0.86[EUR][1000 genomes]
rs1147958	0.98[EUR][1000 genomes]
rs1147960	0.99[EUR][1000 genomes]
rs1147963	0.98[EUR][1000 genomes]
rs1147965	0.98[EUR][1000 genomes]
rs1253711	0.98[EUR][1000 genomes]
rs1253712	0.98[EUR][1000 genomes]
rs1253725	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1253727	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1253737	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1253738	0.93[EUR][1000 genomes]
rs1253740	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1253741	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1253744	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1253746	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1253748	0.94[EUR][1000 genomes]
rs1253944	0.87[EUR][1000 genomes]
rs1270503	0.94[EUR][1000 genomes]
rs1334315	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1413517	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1413518	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1573237	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1631775	0.88[EUR][1000 genomes]
rs1779360	0.93[EUR][1000 genomes]
rs1779361	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2785120	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2785121	0.93[EUR][1000 genomes]
rs4948628	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948629	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs883366	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs883367	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs915084	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2756014	chr10:44966294-44972694	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44967400-44972000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44968800-44974000	Weak transcription	Psoas Muscle	Psoas
3	chr10:44969000-44972000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:44970600-44972200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44970800-44972800	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:44971400-44974600	Enhancers	NHDF-Ad	bronchial
7	chr10:44971600-44972000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:44971600-44975200	Enhancers	Fetal Muscle Leg	muscle
9	chr10:44971600-44975400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:44971600-44975400	Enhancers	Osteobl	bone
11	chr10:44971800-44972000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:44971800-44972000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
13	chr10:44971800-44972200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:44971800-44972400	Enhancers	Fetal Brain Male	brain
15	chr10:44971800-44972800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:44971800-44972800	Enhancers	Fetal Stomach	stomach
17	chr10:44971800-44972800	Enhancers	HSMM	muscle
18	chr10:44971800-44972800	Enhancers	HSMMtube	muscle
19	chr10:44971800-44973000	Enhancers	Right Atrium	heart
20	chr10:44971800-44973800	Enhancers	Fetal Lung	lung
21	chr10:44971800-44974400	Enhancers	Left Ventricle	heart
22	chr10:44971800-44975400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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