Variant report

Variant	rs1573237
Chromosome Location	chr10:44974143-44974144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44972851..44974566-chr10:44988470..44991186,2	K562	blood:
2	chr10:44956453..44959425-chr10:44971550..44974365,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10900041	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10900044	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10900045	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11239049	0.82[ASN][1000 genomes]
rs11239065	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1147920	0.93[EUR][1000 genomes]
rs1147922	0.91[EUR][1000 genomes]
rs1147925	0.93[EUR][1000 genomes]
rs1147927	0.92[EUR][1000 genomes]
rs1147933	0.94[EUR][1000 genomes]
rs1147934	0.92[EUR][1000 genomes]
rs1147937	0.94[EUR][1000 genomes]
rs1147938	0.92[EUR][1000 genomes]
rs1147939	0.94[EUR][1000 genomes]
rs1147944	0.86[EUR][1000 genomes]
rs1147956	0.87[EUR][1000 genomes]
rs1147958	0.99[EUR][1000 genomes]
rs1147960	0.98[EUR][1000 genomes]
rs1147963	0.99[EUR][1000 genomes]
rs1147965	0.99[EUR][1000 genomes]
rs1253711	0.99[EUR][1000 genomes]
rs1253712	0.99[EUR][1000 genomes]
rs1253725	0.94[EUR][1000 genomes]
rs1253727	0.94[EUR][1000 genomes]
rs1253737	0.92[EUR][1000 genomes]
rs1253738	0.92[EUR][1000 genomes]
rs1253740	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1253741	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1253744	0.96[EUR][1000 genomes]
rs1253746	0.96[EUR][1000 genomes]
rs1253748	0.93[EUR][1000 genomes]
rs1253944	0.94[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs1270503	0.93[EUR][1000 genomes]
rs1334315	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1413517	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1413518	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1631775	0.88[EUR][1000 genomes]
rs1779360	0.92[EUR][1000 genomes]
rs1779361	0.94[EUR][1000 genomes]
rs2785120	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2785121	0.94[EUR][1000 genomes]
rs4948628	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4948629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs883366	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs883367	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs915084	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv947901	chr10:44974108-45000726	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44971400-44974600	Enhancers	NHDF-Ad	bronchial
2	chr10:44971600-44975200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44971600-44975400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:44971600-44975400	Enhancers	Osteobl	bone
5	chr10:44971800-44974400	Enhancers	Left Ventricle	heart
6	chr10:44971800-44975400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:44972000-44976000	Enhancers	Ovary	ovary
8	chr10:44972200-44975200	Enhancers	K562	blood
9	chr10:44972800-44974800	Weak transcription	Fetal Stomach	stomach
10	chr10:44972800-44975800	Weak transcription	Right Ventricle	heart
11	chr10:44973000-44974200	Weak transcription	Right Atrium	heart
12	chr10:44973000-44974400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:44973200-44976200	Enhancers	Adipose Nuclei	Adipose
14	chr10:44973600-44974200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:44973600-44976000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr10:44973800-44974200	Enhancers	Fetal Heart	heart
17	chr10:44973800-44974600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:44973800-44975200	Enhancers	Colon Smooth Muscle	Colon
19	chr10:44973800-44975400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr10:44974000-44974200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:44974000-44974400	Enhancers	Fetal Muscle Trunk	muscle
22	chr10:44974000-44975200	Enhancers	Psoas Muscle	Psoas

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