Variant report

Variant	rs1253741
Chromosome Location	chr10:44953629-44953630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10900041	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10900044	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10900045	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11239049	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11239065	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1147920	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1147922	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1147925	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1147927	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1147933	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147934	0.95[EUR][1000 genomes]
rs1147937	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147938	0.95[EUR][1000 genomes]
rs1147939	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147944	0.83[EUR][1000 genomes]
rs1147956	0.83[EUR][1000 genomes]
rs1147958	0.94[EUR][1000 genomes]
rs1147960	0.95[EUR][1000 genomes]
rs1147963	0.94[EUR][1000 genomes]
rs1147965	0.94[EUR][1000 genomes]
rs1253711	0.94[EUR][1000 genomes]
rs1253712	0.94[EUR][1000 genomes]
rs1253725	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1253727	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1253737	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1253738	0.95[EUR][1000 genomes]
rs1253740	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1253744	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1253746	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1253748	0.96[EUR][1000 genomes]
rs1253944	0.84[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1270503	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1334315	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1413517	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1413518	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1573237	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1631775	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1779360	0.95[EUR][1000 genomes]
rs1779361	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2785120	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785121	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4948628	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4948629	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs883366	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs883367	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs915084	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44950000-44956400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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