Variant report

Variant	rs11239049
Chromosome Location	chr10:44947241-44947242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10900041	0.88[ASN][1000 genomes]
rs10900044	0.84[ASN][1000 genomes]
rs10900045	0.85[ASN][1000 genomes]
rs11239065	0.88[ASN][1000 genomes]
rs1147920	0.83[AFR][1000 genomes]
rs1147922	0.80[AFR][1000 genomes]
rs1147925	0.83[AFR][1000 genomes]
rs1147927	0.84[AFR][1000 genomes]
rs1147933	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1147937	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1147939	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1253725	0.95[ASN][1000 genomes]
rs1253727	0.95[ASN][1000 genomes]
rs1253737	0.94[ASN][1000 genomes]
rs1253740	0.88[ASN][1000 genomes]
rs1253741	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1253744	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1253746	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1253944	0.83[ASN][1000 genomes]
rs1413517	0.89[ASN][1000 genomes]
rs1413518	0.89[ASN][1000 genomes]
rs1573237	0.82[ASN][1000 genomes]
rs1631775	0.83[ASN][1000 genomes]
rs1779361	0.96[ASN][1000 genomes]
rs2785120	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4948628	0.88[ASN][1000 genomes]
rs4948629	0.86[ASN][1000 genomes]
rs883366	0.85[ASN][1000 genomes]
rs883367	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44942600-44949000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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