Variant report

Variant	rs1147938
Chromosome Location	chr10:44935131-44935132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10900041	0.93[EUR][1000 genomes]
rs10900044	0.90[EUR][1000 genomes]
rs10900045	0.92[EUR][1000 genomes]
rs11239043	0.80[AFR][1000 genomes]
rs11239065	0.93[EUR][1000 genomes]
rs1147920	0.97[EUR][1000 genomes]
rs1147922	0.94[EUR][1000 genomes]
rs1147925	0.97[EUR][1000 genomes]
rs1147927	0.97[EUR][1000 genomes]
rs1147933	0.99[EUR][1000 genomes]
rs1147934	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147937	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1147939	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1147944	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1147956	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1147958	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1147960	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147963	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1147965	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1253711	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1253712	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1253725	0.99[EUR][1000 genomes]
rs1253727	0.99[EUR][1000 genomes]
rs1253737	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253738	0.97[EUR][1000 genomes]
rs1253740	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1253741	0.95[EUR][1000 genomes]
rs1253744	0.97[EUR][1000 genomes]
rs1253746	0.97[EUR][1000 genomes]
rs1253748	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253944	0.90[EUR][1000 genomes]
rs1270503	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1334315	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1413517	0.93[EUR][1000 genomes]
rs1413518	0.92[EUR][1000 genomes]
rs1573237	0.92[EUR][1000 genomes]
rs1631775	0.91[EUR][1000 genomes]
rs1779360	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1779361	0.99[EUR][1000 genomes]
rs2785120	0.97[EUR][1000 genomes]
rs2785121	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948628	0.94[EUR][1000 genomes]
rs4948629	0.93[EUR][1000 genomes]
rs883366	0.92[EUR][1000 genomes]
rs883367	0.92[EUR][1000 genomes]
rs915084	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44932200-44935800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:44933400-44936200	Enhancers	Fetal Lung	lung
3	chr10:44933600-44935200	Enhancers	Fetal Muscle Leg	muscle
4	chr10:44934000-44935200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:44934400-44935800	Enhancers	Ovary	ovary
6	chr10:44934600-44936200	Enhancers	Spleen	Spleen
7	chr10:44934800-44935400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:44934800-44935600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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