Variant report

Variant	rs1253738
Chromosome Location	chr10:44918955-44918956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10900041	0.93[EUR][1000 genomes]
rs10900044	0.90[EUR][1000 genomes]
rs10900045	0.92[EUR][1000 genomes]
rs11239065	0.93[EUR][1000 genomes]
rs1147920	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147922	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147925	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147927	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147933	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1147934	0.97[EUR][1000 genomes]
rs1147937	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1147938	0.97[EUR][1000 genomes]
rs1147939	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1147944	0.80[EUR][1000 genomes]
rs1147958	0.91[EUR][1000 genomes]
rs1147960	0.92[EUR][1000 genomes]
rs1147963	0.91[EUR][1000 genomes]
rs1147965	0.91[EUR][1000 genomes]
rs1253711	0.91[EUR][1000 genomes]
rs1253712	0.91[EUR][1000 genomes]
rs1253725	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1253727	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1253737	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1253740	0.93[EUR][1000 genomes]
rs1253741	0.95[EUR][1000 genomes]
rs1253744	0.96[EUR][1000 genomes]
rs1253746	0.96[EUR][1000 genomes]
rs1253748	0.96[EUR][1000 genomes]
rs1253944	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1270503	0.96[EUR][1000 genomes]
rs1334315	0.92[EUR][1000 genomes]
rs1413517	0.93[EUR][1000 genomes]
rs1413518	0.92[EUR][1000 genomes]
rs1573237	0.92[EUR][1000 genomes]
rs1631775	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1779360	0.97[EUR][1000 genomes]
rs1779361	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2785120	0.96[EUR][1000 genomes]
rs2785121	0.96[EUR][1000 genomes]
rs4948628	0.94[EUR][1000 genomes]
rs4948629	0.93[EUR][1000 genomes]
rs883366	0.92[EUR][1000 genomes]
rs883367	0.92[EUR][1000 genomes]
rs915084	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44912200-44919800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44915800-44919600	Weak transcription	Pancreas	Pancrea
3	chr10:44916400-44919000	Enhancers	Fetal Muscle Leg	muscle
4	chr10:44918200-44919000	Enhancers	Fetal Stomach	stomach
5	chr10:44918400-44919000	Enhancers	Fetal Lung	lung
6	chr10:44918400-44919000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:44918600-44919600	Weak transcription	Fetal Muscle Trunk	muscle

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