Variant report

Variant	rs10900037
Chromosome Location	chr10:44934817-44934818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10793540	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10900036	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900042	0.93[ASN][1000 genomes]
rs10900043	0.93[ASN][1000 genomes]
rs11239036	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11239038	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11239039	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11239043	1.00[ASN][1000 genomes]
rs11239053	0.93[ASN][1000 genomes]
rs11239061	0.93[ASN][1000 genomes]
rs11239062	0.93[ASN][1000 genomes]
rs11239063	0.92[ASN][1000 genomes]
rs1147941	0.92[ASN][1000 genomes]
rs1147949	0.93[ASN][1000 genomes]
rs1147950	0.93[ASN][1000 genomes]
rs11523862	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598951	0.93[ASN][1000 genomes]
rs1253716	0.93[ASN][1000 genomes]
rs12763241	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12764958	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12770922	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1419281	0.92[ASN][1000 genomes]
rs1572204	0.93[ASN][1000 genomes]
rs1599985	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2225819	1.00[ASN][1000 genomes]
rs35213189	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3961908	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3980045	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948881	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948893	0.92[ASN][1000 genomes]
rs6593415	0.93[ASN][1000 genomes]
rs6593416	0.93[ASN][1000 genomes]
rs6593417	0.93[ASN][1000 genomes]
rs6593418	0.93[ASN][1000 genomes]
rs6593419	0.93[ASN][1000 genomes]
rs6593420	0.93[ASN][1000 genomes]
rs7067631	0.93[ASN][1000 genomes]
rs7070870	1.00[ASN][1000 genomes]
rs7071025	0.92[ASN][1000 genomes]
rs7074207	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075418	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086409	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087908	0.93[ASN][1000 genomes]
rs7899455	0.92[ASN][1000 genomes]
rs7905396	0.93[ASN][1000 genomes]
rs7909036	0.93[ASN][1000 genomes]
rs7909184	0.93[ASN][1000 genomes]
rs7911230	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7916506	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7917412	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920634	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44932200-44935800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:44933400-44935000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:44933400-44936200	Enhancers	Fetal Lung	lung
4	chr10:44933600-44935200	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44934000-44935000	Enhancers	Adipose Nuclei	Adipose
6	chr10:44934000-44935200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44934200-44935000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:44934400-44935000	Enhancers	Placenta	Placenta
9	chr10:44934400-44935800	Enhancers	Ovary	ovary
10	chr10:44934600-44936200	Enhancers	Spleen	Spleen
11	chr10:44934800-44935400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:44934800-44935600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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