Variant report
Variant | rs2225819 |
---|---|
Chromosome Location | chr10:44950554-44950555 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10793540 | 0.96[ASN][1000 genomes] |
rs10900036 | 1.00[ASN][1000 genomes] |
rs10900037 | 1.00[ASN][1000 genomes] |
rs10900042 | 0.93[ASN][1000 genomes] |
rs10900043 | 0.93[ASN][1000 genomes] |
rs11239036 | 0.96[ASN][1000 genomes] |
rs11239038 | 0.86[ASN][1000 genomes] |
rs11239039 | 0.86[ASN][1000 genomes] |
rs11239043 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11239053 | 0.93[ASN][1000 genomes] |
rs11239061 | 0.93[ASN][1000 genomes] |
rs11239062 | 0.93[ASN][1000 genomes] |
rs11239063 | 0.92[ASN][1000 genomes] |
rs1147941 | 0.92[ASN][1000 genomes] |
rs1147949 | 0.93[ASN][1000 genomes] |
rs1147950 | 0.93[ASN][1000 genomes] |
rs11523862 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs11598951 | 0.93[ASN][1000 genomes] |
rs1253716 | 0.93[ASN][1000 genomes] |
rs12763241 | 0.96[ASN][1000 genomes] |
rs12764958 | 0.96[ASN][1000 genomes] |
rs12770922 | 0.96[ASN][1000 genomes] |
rs1419281 | 0.92[ASN][1000 genomes] |
rs1572204 | 0.93[ASN][1000 genomes] |
rs1599985 | 0.96[ASN][1000 genomes] |
rs35213189 | 0.96[ASN][1000 genomes] |
rs3897796 | 0.82[EUR][1000 genomes] |
rs3961908 | 0.96[ASN][1000 genomes] |
rs3980045 | 0.96[ASN][1000 genomes] |
rs4948881 | 0.94[ASN][1000 genomes] |
rs4948889 | 1.00[ASN][1000 genomes] |
rs4948893 | 0.92[ASN][1000 genomes] |
rs6593415 | 0.93[ASN][1000 genomes] |
rs6593416 | 0.93[ASN][1000 genomes] |
rs6593417 | 0.93[ASN][1000 genomes] |
rs6593418 | 0.93[ASN][1000 genomes] |
rs6593419 | 0.93[ASN][1000 genomes] |
rs6593420 | 0.93[ASN][1000 genomes] |
rs7067631 | 0.93[ASN][1000 genomes] |
rs7070870 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7071025 | 0.92[ASN][1000 genomes] |
rs7074207 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7075418 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7086409 | 1.00[ASN][1000 genomes] |
rs7087908 | 0.93[ASN][1000 genomes] |
rs7899455 | 0.92[ASN][1000 genomes] |
rs7905396 | 0.93[ASN][1000 genomes] |
rs7909036 | 0.93[ASN][1000 genomes] |
rs7909184 | 0.93[ASN][1000 genomes] |
rs7911230 | 0.88[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs7916506 | 0.81[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs7917412 | 1.00[ASN][1000 genomes] |
rs7920634 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv895101 | chr10:44909081-45007131 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:44950000-44956400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |