Variant report

Variant	rs7916506
Chromosome Location	chr10:44949085-44949086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10793540	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10900036	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900037	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900042	0.92[ASN][1000 genomes]
rs10900043	0.92[ASN][1000 genomes]
rs11239036	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239038	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11239039	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11239043	0.98[ASN][1000 genomes]
rs11239053	0.92[ASN][1000 genomes]
rs11239061	0.92[ASN][1000 genomes]
rs11239062	0.92[ASN][1000 genomes]
rs11239063	0.91[ASN][1000 genomes]
rs1147941	0.91[ASN][1000 genomes]
rs1147949	0.92[ASN][1000 genomes]
rs1147950	0.92[ASN][1000 genomes]
rs11523862	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11598951	0.92[ASN][1000 genomes]
rs1253716	0.92[ASN][1000 genomes]
rs12763241	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12764958	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12770922	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1419281	0.91[ASN][1000 genomes]
rs1572204	0.92[ASN][1000 genomes]
rs1599985	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2225819	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35213189	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3961908	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3980045	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948881	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948889	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948893	0.91[ASN][1000 genomes]
rs6593415	0.92[ASN][1000 genomes]
rs6593416	0.92[ASN][1000 genomes]
rs6593417	0.92[ASN][1000 genomes]
rs6593418	0.92[ASN][1000 genomes]
rs6593419	0.92[ASN][1000 genomes]
rs6593420	0.92[ASN][1000 genomes]
rs7067631	0.92[ASN][1000 genomes]
rs7070870	0.98[ASN][1000 genomes]
rs7071025	0.90[ASN][1000 genomes]
rs7074207	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7075418	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7086409	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7087908	0.92[ASN][1000 genomes]
rs7899455	0.91[ASN][1000 genomes]
rs7905396	0.92[ASN][1000 genomes]
rs7909036	0.92[ASN][1000 genomes]
rs7909184	0.92[ASN][1000 genomes]
rs7911230	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7917412	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7920634	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44949000-44949200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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