Variant report

Variant	rs4948645
Chromosome Location	chr10:45391481-45391482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10736831	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs10751360	0.96[EUR][1000 genomes]
rs10751361	0.97[EUR][1000 genomes]
rs10793562	0.91[ASN][1000 genomes]
rs10793563	0.92[ASN][1000 genomes]
rs10793564	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793565	0.95[EUR][1000 genomes]
rs10900123	0.84[EUR][1000 genomes]
rs10900125	0.91[ASN][1000 genomes]
rs10900126	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10900128	0.97[EUR][1000 genomes]
rs11239271	0.84[EUR][1000 genomes]
rs12777258	0.96[EUR][1000 genomes]
rs1332625	0.89[ASN][1000 genomes]
rs1408814	0.97[EUR][1000 genomes]
rs1977324	0.90[ASN][1000 genomes]
rs2026427	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2026428	0.96[EUR][1000 genomes]
rs2065466	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2183994	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2281840	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2281841	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3900184	0.91[ASN][1000 genomes]
rs4147126	0.85[CHD][hapmap]
rs4245614	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4268464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4284362	0.87[ASN][1000 genomes]
rs4439464	0.92[ASN][1000 genomes]
rs4481983	0.95[EUR][1000 genomes]
rs4506594	0.92[ASN][1000 genomes]
rs4948642	0.91[ASN][1000 genomes]
rs4948643	0.91[ASN][1000 genomes]
rs4948644	0.91[ASN][1000 genomes]
rs4948921	0.92[ASN][1000 genomes]
rs4948922	0.92[ASN][1000 genomes]
rs4948924	0.92[ASN][1000 genomes]
rs4948925	0.96[EUR][1000 genomes]
rs4948926	0.96[EUR][1000 genomes]
rs4948927	0.97[EUR][1000 genomes]
rs5000415	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6593447	0.95[EUR][1000 genomes]
rs7079573	0.95[EUR][1000 genomes]
rs7082011	0.92[ASN][1000 genomes]
rs7099692	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7894608	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7900859	0.91[ASN][1000 genomes]
rs7903412	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7909074	0.96[EUR][1000 genomes]
rs879073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs879074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs879343	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs879344	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs914699	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45375200-45398600	Weak transcription	Right Atrium	heart
2	chr10:45387000-45398400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:45390600-45391600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:45390600-45391600	Enhancers	Brain Germinal Matrix	brain
5	chr10:45390600-45391600	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:45391000-45399000	Weak transcription	Primary T cells from cord blood	blood
7	chr10:45391400-45394000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:45391400-45394200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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