Variant report

Variant	rs10751361
Chromosome Location	chr10:45398186-45398187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10736831	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10751360	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793564	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10793565	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10900123	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10900126	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10900127	0.83[ASN][1000 genomes]
rs10900128	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239271	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12777258	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1408814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2026428	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2065466	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2281841	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3740086	0.84[ASN][1000 genomes]
rs3740087	0.85[ASN][1000 genomes]
rs4245614	0.98[EUR][1000 genomes]
rs4268464	0.96[EUR][1000 genomes]
rs4481983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948645	0.97[EUR][1000 genomes]
rs4948925	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4948926	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948927	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5000415	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6593447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7079573	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903412	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7909074	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs879073	0.97[EUR][1000 genomes]
rs879074	0.97[EUR][1000 genomes]
rs914699	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10751361	ALOX5	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45375200-45398600	Weak transcription	Right Atrium	heart
2	chr10:45387000-45398400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:45391000-45399000	Weak transcription	Primary T cells from cord blood	blood
4	chr10:45394600-45398400	Weak transcription	Pancreas	Pancrea
5	chr10:45395600-45398800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:45395800-45398600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:45395800-45398600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:45395800-45399200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:45395800-45399400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:45397400-45399600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:45397600-45399200	Enhancers	Fetal Brain Male	brain
12	chr10:45397800-45398600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:45397800-45398600	Enhancers	Fetal Lung	lung
14	chr10:45397800-45399400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:45397800-45399400	Enhancers	Fetal Brain Female	brain
16	chr10:45397800-45399600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:45398000-45398600	Enhancers	Brain Hippocampus Middle	brain
18	chr10:45398000-45399200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:45398000-45399400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:45398000-45399600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:45398000-45399600	Enhancers	Fetal Muscle Leg	muscle

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