Variant report

Variant	rs3740086
Chromosome Location	chr10:45375296-45375297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45360055..45361771-chr10:45374872..45377256,2	K562	blood:
2	chr10:45358806..45362184-chr10:45374031..45377195,7	MCF-7	breast:
3	chr10:45374438..45376422-chr10:45380219..45382953,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10736831	0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10751360	0.89[ASN][1000 genomes]
rs10751361	0.84[ASN][1000 genomes]
rs10793562	0.95[EUR][1000 genomes]
rs10793563	0.86[EUR][1000 genomes]
rs10793565	0.95[ASN][1000 genomes]
rs10900123	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10900125	0.86[EUR][1000 genomes]
rs10900127	0.84[ASN][1000 genomes]
rs10900128	0.89[ASN][1000 genomes]
rs10900129	0.87[ASN][1000 genomes]
rs11239271	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11239274	0.88[ASN][1000 genomes]
rs12777258	0.89[ASN][1000 genomes]
rs1408814	0.89[ASN][1000 genomes]
rs1977324	0.92[EUR][1000 genomes]
rs2026427	0.83[EUR][1000 genomes]
rs2026428	0.95[ASN][1000 genomes]
rs2183994	0.84[EUR][1000 genomes]
rs2281841	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs3740087	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4284362	0.95[EUR][1000 genomes]
rs4439464	0.85[EUR][1000 genomes]
rs4481983	0.89[ASN][1000 genomes]
rs4506594	0.85[EUR][1000 genomes]
rs4948642	0.95[EUR][1000 genomes]
rs4948643	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4948644	0.89[EUR][1000 genomes]
rs4948922	0.86[EUR][1000 genomes]
rs4948924	0.84[EUR][1000 genomes]
rs4948925	0.88[ASN][1000 genomes]
rs4948926	0.85[ASN][1000 genomes]
rs4948927	0.89[ASN][1000 genomes]
rs6593447	0.89[ASN][1000 genomes]
rs7079573	0.89[ASN][1000 genomes]
rs7082011	0.86[EUR][1000 genomes]
rs7099692	0.82[EUR][1000 genomes]
rs7894608	0.85[EUR][1000 genomes]
rs7900859	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7909074	0.89[ASN][1000 genomes]
rs879343	0.82[EUR][1000 genomes]
rs879344	0.82[EUR][1000 genomes]
rs914699	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1050496	chr10:45227530-45382154	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45374000-45375400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:45374000-45375400	Active TSS	Brain Angular Gyrus	brain
3	chr10:45374000-45375400	Flanking Active TSS	Fetal Brain Female	brain
4	chr10:45374000-45375400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr10:45374000-45375400	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr10:45374200-45376200	Enhancers	Spleen	Spleen
7	chr10:45374400-45375400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
8	chr10:45374600-45375400	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr10:45374800-45375400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:45374800-45375400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
11	chr10:45374800-45375400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:45374800-45375400	Bivalent Enhancer	Placenta	Placenta
13	chr10:45374800-45379200	Enhancers	Pancreas	Pancrea
14	chr10:45374800-45381600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:45375000-45375400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:45375000-45375400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:45375000-45375400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr10:45375000-45375400	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:45375000-45375400	Flanking Active TSS	Brain Cingulate Gyrus	brain
20	chr10:45375000-45375400	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr10:45375000-45375400	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr10:45375000-45375400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr10:45375000-45375400	Enhancers	Fetal Brain Male	brain
24	chr10:45375000-45375400	Enhancers	Fetal Heart	heart
25	chr10:45375000-45375400	Bivalent Enhancer	Fetal Intestine Small	intestine
26	chr10:45375000-45375400	Enhancers	Placenta Amnion	Placenta Amnion
27	chr10:45375000-45375800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:45375000-45375800	Bivalent Enhancer	Fetal Stomach	stomach
29	chr10:45375000-45376000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
30	chr10:45375000-45378200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:45375200-45375400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:45375200-45375400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:45375200-45375400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:45375200-45375400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:45375200-45375400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:45375200-45375400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:45375200-45375400	Enhancers	Adipose Nuclei	Adipose
38	chr10:45375200-45375400	Enhancers	Rectal Smooth Muscle	rectum
39	chr10:45375200-45375400	Enhancers	Right Ventricle	heart
40	chr10:45375200-45375600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
41	chr10:45375200-45375800	Enhancers	Fetal Muscle Leg	muscle
42	chr10:45375200-45376000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
43	chr10:45375200-45376000	Enhancers	Ovary	ovary
44	chr10:45375200-45376200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:45375200-45376200	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr10:45375200-45377000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:45375200-45377000	Weak transcription	Fetal Thymus	thymus
48	chr10:45375200-45377200	Weak transcription	Left Ventricle	heart
49	chr10:45375200-45378800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:45375200-45398600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links