Variant report

Variant	rs3740087
Chromosome Location	chr10:45375530-45375531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45360055..45361771-chr10:45374872..45377256,2	K562	blood:
2	chr10:45358806..45362184-chr10:45374031..45377195,7	MCF-7	breast:
3	chr10:45374438..45376422-chr10:45380219..45382953,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10736831	0.90[ASN][1000 genomes]
rs10751360	0.91[ASN][1000 genomes]
rs10751361	0.85[ASN][1000 genomes]
rs10793562	0.91[EUR][1000 genomes]
rs10793563	0.82[EUR][1000 genomes]
rs10793565	0.97[ASN][1000 genomes]
rs10900123	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10900125	0.82[EUR][1000 genomes]
rs10900127	0.82[ASN][1000 genomes]
rs10900128	0.91[ASN][1000 genomes]
rs10900129	0.85[ASN][1000 genomes]
rs11239271	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11239274	0.86[ASN][1000 genomes]
rs12777258	0.91[ASN][1000 genomes]
rs1408814	0.90[ASN][1000 genomes]
rs1977324	0.89[EUR][1000 genomes]
rs2026427	0.80[EUR][1000 genomes]
rs2026428	0.97[ASN][1000 genomes]
rs2183994	0.81[EUR][1000 genomes]
rs2281841	0.81[ASN][1000 genomes]
rs3740086	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4284362	0.92[EUR][1000 genomes]
rs4439464	0.82[EUR][1000 genomes]
rs4481983	0.90[ASN][1000 genomes]
rs4506594	0.82[EUR][1000 genomes]
rs4948642	0.92[EUR][1000 genomes]
rs4948643	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4948644	0.85[EUR][1000 genomes]
rs4948922	0.82[EUR][1000 genomes]
rs4948924	0.81[EUR][1000 genomes]
rs4948925	0.90[ASN][1000 genomes]
rs4948926	0.86[ASN][1000 genomes]
rs4948927	0.91[ASN][1000 genomes]
rs6593447	0.90[ASN][1000 genomes]
rs7079573	0.90[ASN][1000 genomes]
rs7082011	0.82[EUR][1000 genomes]
rs7894608	0.81[EUR][1000 genomes]
rs7900859	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7909074	0.91[ASN][1000 genomes]
rs914699	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1050496	chr10:45227530-45382154	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45374200-45376200	Enhancers	Spleen	Spleen
2	chr10:45374800-45379200	Enhancers	Pancreas	Pancrea
3	chr10:45374800-45381600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:45375000-45375800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:45375000-45375800	Bivalent Enhancer	Fetal Stomach	stomach
6	chr10:45375000-45376000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr10:45375000-45378200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:45375200-45375600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr10:45375200-45375800	Enhancers	Fetal Muscle Leg	muscle
10	chr10:45375200-45376000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr10:45375200-45376000	Enhancers	Ovary	ovary
12	chr10:45375200-45376200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:45375200-45376200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr10:45375200-45377000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:45375200-45377000	Weak transcription	Fetal Thymus	thymus
16	chr10:45375200-45377200	Weak transcription	Left Ventricle	heart
17	chr10:45375200-45378800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:45375200-45398600	Weak transcription	Right Atrium	heart
19	chr10:45375400-45375600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:45375400-45375600	Flanking Active TSS	Brain Germinal Matrix	brain
21	chr10:45375400-45375600	Enhancers	Colon Smooth Muscle	Colon
22	chr10:45375400-45375600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
23	chr10:45375400-45375800	Enhancers	Brain Angular Gyrus	brain
24	chr10:45375400-45375800	Enhancers	Fetal Brain Female	brain
25	chr10:45375400-45375800	Enhancers	Stomach Smooth Muscle	stomach
26	chr10:45375400-45376000	Active TSS	Brain Cingulate Gyrus	brain
27	chr10:45375400-45376200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:45375400-45376800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:45375400-45377000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:45375400-45377200	Weak transcription	Fetal Heart	heart
31	chr10:45375400-45377400	Weak transcription	Right Ventricle	heart

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