Variant report

Variant	rs1408814
Chromosome Location	chr10:45399088-45399089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45398629..45401075-chr10:45411159..45413605,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10736831	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751360	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751361	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793564	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10793565	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10900123	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10900126	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10900128	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900129	0.84[ASN][1000 genomes]
rs11239271	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11239274	0.83[ASN][1000 genomes]
rs12777258	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2026428	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2065466	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2281841	0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3740086	0.89[ASN][1000 genomes]
rs3740087	0.90[ASN][1000 genomes]
rs4245614	0.98[EUR][1000 genomes]
rs4268464	0.96[EUR][1000 genomes]
rs4481983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948645	0.97[EUR][1000 genomes]
rs4948925	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948926	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948927	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5000415	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6593447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903412	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7909074	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs879073	0.97[EUR][1000 genomes]
rs879074	0.97[EUR][1000 genomes]
rs914699	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45395800-45399200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45395800-45399400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:45397400-45399600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:45397600-45399200	Enhancers	Fetal Brain Male	brain
5	chr10:45397800-45399400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:45397800-45399400	Enhancers	Fetal Brain Female	brain
7	chr10:45397800-45399600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:45398000-45399200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:45398000-45399400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:45398000-45399600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:45398000-45399600	Enhancers	Fetal Muscle Leg	muscle
12	chr10:45398200-45399200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:45398400-45399200	Enhancers	Fetal Stomach	stomach
14	chr10:45398400-45399400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:45398400-45399400	Enhancers	Pancreas	Pancrea
16	chr10:45398400-45399600	Enhancers	Fetal Thymus	thymus
17	chr10:45398400-45400800	Enhancers	Fetal Kidney	kidney
18	chr10:45398600-45399200	Enhancers	Right Atrium	heart
19	chr10:45398600-45399400	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:45398600-45403400	Weak transcription	Fetal Lung	lung
21	chr10:45398600-45406800	Weak transcription	Right Ventricle	heart
22	chr10:45398800-45399200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:45399000-45399400	Enhancers	Primary T cells from cord blood	blood
24	chr10:45399000-45403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:45399000-45403200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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