Variant report
| Variant | rs4948747 |
|---|---|
| Chromosome Location | chr10:44078656-44078657 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:62)
| rs_ID | r2[population] |
|---|---|
| rs10793442 | 0.92[ASN][1000 genomes] |
| rs10793443 | 0.92[ASN][1000 genomes] |
| rs10899827 | 0.93[ASN][1000 genomes] |
| rs10899828 | 0.91[ASN][1000 genomes] |
| rs11238585 | 0.91[ASN][1000 genomes] |
| rs11238588 | 0.94[ASN][1000 genomes] |
| rs12354445 | 0.92[ASN][1000 genomes] |
| rs12415781 | 0.83[ASN][1000 genomes] |
| rs12784891 | 0.91[ASN][1000 genomes] |
| rs1338565 | 0.94[ASN][1000 genomes] |
| rs1832470 | 0.99[ASN][1000 genomes] |
| rs2230660 | 0.92[ASN][1000 genomes] |
| rs2230661 | 0.92[ASN][1000 genomes] |
| rs2393938 | 0.94[ASN][1000 genomes] |
| rs2393939 | 0.99[ASN][1000 genomes] |
| rs2393942 | 0.92[ASN][1000 genomes] |
| rs2393959 | 0.92[ASN][1000 genomes] |
| rs2393960 | 0.92[ASN][1000 genomes] |
| rs2860340 | 0.92[ASN][1000 genomes] |
| rs2999270 | 0.89[ASN][1000 genomes] |
| rs2999271 | 0.92[ASN][1000 genomes] |
| rs2999272 | 0.92[ASN][1000 genomes] |
| rs2999273 | 0.87[ASN][1000 genomes] |
| rs2999274 | 0.92[ASN][1000 genomes] |
| rs2999277 | 0.92[ASN][1000 genomes] |
| rs2999278 | 0.92[ASN][1000 genomes] |
| rs2999279 | 0.92[ASN][1000 genomes] |
| rs2999280 | 0.90[ASN][1000 genomes] |
| rs3006379 | 0.92[ASN][1000 genomes] |
| rs3006380 | 0.89[ASN][1000 genomes] |
| rs3006383 | 0.89[ASN][1000 genomes] |
| rs3006384 | 0.92[ASN][1000 genomes] |
| rs3006385 | 0.92[ASN][1000 genomes] |
| rs3763789 | 0.94[ASN][1000 genomes] |
| rs6593359 | 0.99[ASN][1000 genomes] |
| rs7078691 | 0.92[ASN][1000 genomes] |
| rs7079328 | 0.91[ASN][1000 genomes] |
| rs7086537 | 0.94[ASN][1000 genomes] |
| rs7089577 | 0.90[ASN][1000 genomes] |
| rs7091995 | 0.92[ASN][1000 genomes] |
| rs7092156 | 0.89[ASN][1000 genomes] |
| rs7101356 | 0.87[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7893169 | 0.92[ASN][1000 genomes] |
| rs7894102 | 0.92[ASN][1000 genomes] |
| rs7897611 | 0.96[ASN][1000 genomes] |
| rs7906129 | 0.99[ASN][1000 genomes] |
| rs7913084 | 0.99[ASN][1000 genomes] |
| rs7915227 | 0.93[ASN][1000 genomes] |
| rs9326506 | 0.91[ASN][1000 genomes] |
| rs9422385 | 0.99[ASN][1000 genomes] |
| rs9422388 | 0.99[ASN][1000 genomes] |
| rs9422540 | 0.92[ASN][1000 genomes] |
| rs9422541 | 0.90[ASN][1000 genomes] |
| rs9422543 | 0.94[ASN][1000 genomes] |
| rs9422544 | 0.95[ASN][1000 genomes] |
| rs9422545 | 0.92[ASN][1000 genomes] |
| rs9422546 | 0.95[ASN][1000 genomes] |
| rs9422547 | 0.99[ASN][1000 genomes] |
| rs9422549 | 0.99[ASN][1000 genomes] |
| rs9422550 | 0.96[ASN][1000 genomes] |
| rs9422555 | 0.99[ASN][1000 genomes] |
| rs9422557 | 0.92[ASN][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4948747 | ZNF239 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:44072400-44080600 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
