Variant report

Variant	rs7893169
Chromosome Location	chr10:44050715-44050716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44048373..44055141-chr10:44068006..44071269,9	K562	blood:
2	chr10:44050264..44052711-chr10:44137986..44140975,2	K562	blood:
3	chr10:44047726..44051764-chr10:44138439..44140975,3	K562	blood:
4	chr10:44045670..44047822-chr10:44049700..44053652,4	K562	blood:

Variant related genes	Relation type
ENSG00000196793	Chromatin interaction
ENSG00000226245	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10793442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793443	0.96[ASN][1000 genomes]
rs10899827	0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs10899828	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11238585	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238588	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12354445	0.99[ASN][1000 genomes]
rs12415781	0.89[ASN][1000 genomes]
rs12784891	0.94[ASN][1000 genomes]
rs1338565	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1832470	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2230660	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2230661	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2393938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2393939	0.92[ASN][1000 genomes]
rs2393942	0.84[ASN][1000 genomes]
rs2393959	0.99[ASN][1000 genomes]
rs2393960	0.99[ASN][1000 genomes]
rs2860340	0.99[ASN][1000 genomes]
rs2999270	0.96[ASN][1000 genomes]
rs2999271	0.99[ASN][1000 genomes]
rs2999272	0.99[ASN][1000 genomes]
rs2999273	0.94[ASN][1000 genomes]
rs2999274	0.99[ASN][1000 genomes]
rs2999277	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2999278	0.99[ASN][1000 genomes]
rs2999279	0.99[ASN][1000 genomes]
rs2999280	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3006379	0.99[ASN][1000 genomes]
rs3006380	0.96[ASN][1000 genomes]
rs3006383	0.96[ASN][1000 genomes]
rs3006384	0.99[ASN][1000 genomes]
rs3006385	0.97[ASN][1000 genomes]
rs3763789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948747	0.92[ASN][1000 genomes]
rs6593359	0.92[ASN][1000 genomes]
rs7078691	0.96[ASN][1000 genomes]
rs7079328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7086537	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7089577	0.93[ASN][1000 genomes]
rs7091995	0.96[ASN][1000 genomes]
rs7092156	0.94[ASN][1000 genomes]
rs7101356	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7894102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897611	0.89[ASN][1000 genomes]
rs7906129	0.92[ASN][1000 genomes]
rs7913084	0.92[ASN][1000 genomes]
rs7915227	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9326506	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9422385	0.92[ASN][1000 genomes]
rs9422388	0.92[ASN][1000 genomes]
rs9422540	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs9422541	0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9422543	0.96[ASN][1000 genomes]
rs9422544	0.96[ASN][1000 genomes]
rs9422545	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9422546	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9422547	0.92[ASN][1000 genomes]
rs9422549	0.92[ASN][1000 genomes]
rs9422550	0.89[ASN][1000 genomes]
rs9422555	0.91[ASN][1000 genomes]
rs9422557	0.84[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44043200-44051600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:44044400-44050800	Weak transcription	Fetal Lung	lung
3	chr10:44047400-44051200	Weak transcription	HSMM	muscle
4	chr10:44048800-44050800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:44048800-44052200	Weak transcription	Right Ventricle	heart
6	chr10:44049000-44050800	Weak transcription	Ovary	ovary
7	chr10:44049000-44052200	Weak transcription	Fetal Intestine Large	intestine
8	chr10:44049000-44057200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr10:44049200-44051400	Weak transcription	Fetal Brain Male	brain
10	chr10:44049200-44051400	Weak transcription	Small Intestine	intestine
11	chr10:44049400-44050800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:44049400-44052000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:44049400-44052200	Weak transcription	Brain Substantia Nigra	brain
14	chr10:44049400-44055800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr10:44049600-44051200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:44049600-44053000	Weak transcription	Psoas Muscle	Psoas
17	chr10:44049600-44055400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:44050000-44052200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:44050000-44055400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr10:44050000-44057800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:44050000-44058600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr10:44050200-44051000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:44050200-44052200	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:44050200-44054200	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:44050200-44055000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:44050200-44055000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:44050200-44055000	ZNF genes & repeats	Aorta	Aorta
28	chr10:44050400-44050800	Weak transcription	Brain Angular Gyrus	brain
29	chr10:44050400-44052000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:44050400-44053800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
31	chr10:44050400-44069200	Weak transcription	Fetal Thymus	thymus
32	chr10:44050600-44051800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:44050600-44052000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:44050600-44052200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:44050600-44052200	Weak transcription	HSMMtube	muscle
36	chr10:44050600-44053200	ZNF genes & repeats	Brain Germinal Matrix	brain
37	chr10:44050600-44053600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:44050600-44055000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:44050600-44055400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
40	chr10:44050600-44055600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:44050600-44056000	ZNF genes & repeats	Liver	Liver
42	chr10:44050600-44056200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
43	chr10:44050600-44056400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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