Variant report

Variant	rs7079328
Chromosome Location	chr10:44049745-44049746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44048373..44055141-chr10:44068006..44071269,9	K562	blood:
2	chr10:44047726..44051764-chr10:44138439..44140975,3	K562	blood:
3	chr10:44045670..44047822-chr10:44049700..44053652,4	K562	blood:

Variant related genes	Relation type
ENSG00000226245	Chromatin interaction
ENSG00000196793	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10793442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793443	0.94[ASN][1000 genomes]
rs10899827	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10899828	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11238585	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238588	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12354445	0.98[ASN][1000 genomes]
rs12415781	0.88[ASN][1000 genomes]
rs12784891	0.93[ASN][1000 genomes]
rs1338565	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1832470	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2230660	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2230661	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2393938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2393939	0.90[ASN][1000 genomes]
rs2393942	0.83[ASN][1000 genomes]
rs2393959	0.98[ASN][1000 genomes]
rs2393960	0.98[ASN][1000 genomes]
rs2860340	0.98[ASN][1000 genomes]
rs2999270	0.95[ASN][1000 genomes]
rs2999271	0.98[ASN][1000 genomes]
rs2999272	0.98[ASN][1000 genomes]
rs2999273	0.93[ASN][1000 genomes]
rs2999274	0.98[ASN][1000 genomes]
rs2999277	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2999278	0.98[ASN][1000 genomes]
rs2999279	0.98[ASN][1000 genomes]
rs2999280	0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3006379	0.98[ASN][1000 genomes]
rs3006380	0.95[ASN][1000 genomes]
rs3006383	0.95[ASN][1000 genomes]
rs3006384	0.98[ASN][1000 genomes]
rs3006385	0.96[ASN][1000 genomes]
rs3763789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948747	0.91[ASN][1000 genomes]
rs6593359	0.90[ASN][1000 genomes]
rs7078691	0.94[ASN][1000 genomes]
rs7086537	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7089577	0.92[ASN][1000 genomes]
rs7091995	0.95[ASN][1000 genomes]
rs7092156	0.92[ASN][1000 genomes]
rs7101356	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7893169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7894102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7897611	0.88[ASN][1000 genomes]
rs7906129	0.90[ASN][1000 genomes]
rs7913084	0.90[ASN][1000 genomes]
rs7915227	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9326506	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9422385	0.90[ASN][1000 genomes]
rs9422388	0.90[ASN][1000 genomes]
rs9422540	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9422541	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9422543	0.95[ASN][1000 genomes]
rs9422544	0.94[ASN][1000 genomes]
rs9422545	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9422546	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9422547	0.90[ASN][1000 genomes]
rs9422549	0.90[ASN][1000 genomes]
rs9422550	0.88[ASN][1000 genomes]
rs9422555	0.90[ASN][1000 genomes]
rs9422557	0.83[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44043200-44051600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:44044400-44050800	Weak transcription	Fetal Lung	lung
3	chr10:44046800-44049800	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:44047400-44051200	Weak transcription	HSMM	muscle
5	chr10:44047600-44050200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:44048400-44050200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:44048600-44050200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:44048800-44050600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:44048800-44050800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:44048800-44052200	Weak transcription	Right Ventricle	heart
11	chr10:44049000-44050200	Weak transcription	Aorta	Aorta
12	chr10:44049000-44050800	Weak transcription	Ovary	ovary
13	chr10:44049000-44052200	Weak transcription	Fetal Intestine Large	intestine
14	chr10:44049000-44057200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr10:44049200-44051400	Weak transcription	Fetal Brain Male	brain
16	chr10:44049200-44051400	Weak transcription	Small Intestine	intestine
17	chr10:44049400-44050800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:44049400-44052000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:44049400-44052200	Weak transcription	Brain Substantia Nigra	brain
20	chr10:44049400-44055800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr10:44049600-44050200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:44049600-44051200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:44049600-44053000	Weak transcription	Psoas Muscle	Psoas
24	chr10:44049600-44055400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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